Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0007
         (827 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z35604-6|CAA84681.1|  305|Caenorhabditis elegans Hypothetical pr...    31   0.76 
Z74475-2|CAA98958.4|  385|Caenorhabditis elegans Hypothetical pr...    30   1.8  
U53139-5|AAK18933.2|  322|Caenorhabditis elegans Serpentine rece...    30   1.8  
L46861-1|AAA74747.1| 2553|Caenorhabditis elegans talin protein.        30   2.3  
AC025726-17|AAK73909.2| 2553|Caenorhabditis elegans Hypothetical...    30   2.3  
Z54236-4|CAA90984.1| 1274|Caenorhabditis elegans Hypothetical pr...    29   5.4  
Z70034-10|CAI79119.2|  560|Caenorhabditis elegans Hypothetical p...    28   7.1  
Z70034-3|CAA93860.2|  620|Caenorhabditis elegans Hypothetical pr...    28   7.1  
Z70034-2|CAA93854.3|  623|Caenorhabditis elegans Hypothetical pr...    28   7.1  
Z68106-8|CAA92125.2|  558|Caenorhabditis elegans Hypothetical pr...    28   7.1  
Z49153-3|CAD30426.1|  558|Caenorhabditis elegans Hypothetical pr...    28   7.1  
AF125443-1|AAD12801.1|  783|Caenorhabditis elegans Hypothetical ...    28   7.1  
AF063007-7|AAC16428.1|  659|Caenorhabditis elegans Hypothetical ...    28   7.1  
AF022985-13|AAB69968.1|  375|Caenorhabditis elegans Hypothetical...    28   9.4  

>Z35604-6|CAA84681.1|  305|Caenorhabditis elegans Hypothetical
           protein ZK1058.6 protein.
          Length = 305

 Score = 31.5 bits (68), Expect = 0.76
 Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = -3

Query: 723 SYRPVHPTLVGRMMCAVCRRN-MPVFRF-LYENQWSVFVLPFLD 598
           S  PV  T VG++  A+C  N MP++R  LY  +  +++ P +D
Sbjct: 145 STMPVFSTSVGKIGSAICWENYMPLYRMTLYSKEIQIYLAPTVD 188


>Z74475-2|CAA98958.4|  385|Caenorhabditis elegans Hypothetical
           protein R04F11.3 protein.
          Length = 385

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 357 SQDSKHFESSRPRSFKARKEPTGERSNRSDSPRK 458
           SQDS  F SSR +S +  K P  +R   +D  +K
Sbjct: 245 SQDSDEFPSSREQSVEKEKSPPAKRKRVNDENKK 278


>U53139-5|AAK18933.2|  322|Caenorhabditis elegans Serpentine
           receptor, class xa protein4 protein.
          Length = 322

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +2

Query: 50  ILYLLRRLKHCSFKFDSFFTKTESHRTLVL 139
           I YL+R    CS  F  +F +T+S R LVL
Sbjct: 266 ITYLVRLFAFCSLNFFVYFVETKSTRNLVL 295


>L46861-1|AAA74747.1| 2553|Caenorhabditis elegans talin protein.
          Length = 2553

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 15/57 (26%), Positives = 30/57 (52%)
 Frame = +1

Query: 265  LKRSPARVGATISELNTPIQTPKDMVFSQTSLKTRNILKVVDLDRLKPEKNQQANGL 435
            L +S  R+G ++++L T +   + + FSQ  L +  ++K +D   +  +K   A  L
Sbjct: 1053 LDQSANRLGTSLADLRTSVNDAQQLNFSQQLLYSEELIKELDDQLVNTQKRAIAREL 1109


>AC025726-17|AAK73909.2| 2553|Caenorhabditis elegans Hypothetical
            protein Y71G12B.11a protein.
          Length = 2553

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 15/57 (26%), Positives = 30/57 (52%)
 Frame = +1

Query: 265  LKRSPARVGATISELNTPIQTPKDMVFSQTSLKTRNILKVVDLDRLKPEKNQQANGL 435
            L +S  R+G ++++L T +   + + FSQ  L +  ++K +D   +  +K   A  L
Sbjct: 1053 LDQSANRLGTSLADLRTSVNDAQQLNFSQQLLYSEELIKELDDQLVNTQKRAIAREL 1109


>Z54236-4|CAA90984.1| 1274|Caenorhabditis elegans Hypothetical
           protein C27B7.4 protein.
          Length = 1274

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +1

Query: 397 RLKPEKNQQANGLTGVIHQGNNGVMP 474
           +L+ ++ QQ   L G++  GNNG+MP
Sbjct: 653 QLQQQQQQQQQQLQGMMMMGNNGMMP 678


>Z70034-10|CAI79119.2|  560|Caenorhabditis elegans Hypothetical
           protein C18E9.3c protein.
          Length = 560

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = +2

Query: 218 SLGAQEEFNQFYKNGCSKDHLPESERRYRNSIHQSKHQKTWFFRKR 355
           S  +Q +  QFY+NG S  + P + R+ ++   Q +++   F + R
Sbjct: 444 SYSSQPQNGQFYQNGNSNQNNPNNGRKQQHQPQQQQNKSGKFGQNR 489


>Z70034-3|CAA93860.2|  620|Caenorhabditis elegans Hypothetical
           protein C18E9.3b protein.
          Length = 620

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = +2

Query: 218 SLGAQEEFNQFYKNGCSKDHLPESERRYRNSIHQSKHQKTWFFRKR 355
           S  +Q +  QFY+NG S  + P + R+ ++   Q +++   F + R
Sbjct: 504 SYSSQPQNGQFYQNGNSNQNNPNNGRKQQHQPQQQQNKSGKFGQNR 549


>Z70034-2|CAA93854.3|  623|Caenorhabditis elegans Hypothetical
           protein C18E9.3a protein.
          Length = 623

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = +2

Query: 218 SLGAQEEFNQFYKNGCSKDHLPESERRYRNSIHQSKHQKTWFFRKR 355
           S  +Q +  QFY+NG S  + P + R+ ++   Q +++   F + R
Sbjct: 507 SYSSQPQNGQFYQNGNSNQNNPNNGRKQQHQPQQQQNKSGKFGQNR 552


>Z68106-8|CAA92125.2|  558|Caenorhabditis elegans Hypothetical
           protein F41E7.2 protein.
          Length = 558

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -3

Query: 705 PTLVGRMMCAVCRRNMPVF-RFLYENQWSVFVL 610
           P+L+G M+  +  RN+P F    Y N++  F+L
Sbjct: 95  PSLIGCMLVGIAMRNVPQFGELFYINEYWQFIL 127


>Z49153-3|CAD30426.1|  558|Caenorhabditis elegans Hypothetical
           protein F41E7.2 protein.
          Length = 558

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -3

Query: 705 PTLVGRMMCAVCRRNMPVF-RFLYENQWSVFVL 610
           P+L+G M+  +  RN+P F    Y N++  F+L
Sbjct: 95  PSLIGCMLVGIAMRNVPQFGELFYINEYWQFIL 127


>AF125443-1|AAD12801.1|  783|Caenorhabditis elegans Hypothetical
           protein H32C10.3 protein.
          Length = 783

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
 Frame = +1

Query: 457 NNGVMPQGTVPTASFSEDI*NRNSYTRAQCFT--VRTQSSSKNWISCAPIQKGKNKHGPL 630
           N GV+P+ T P   F +D+          CFT  +   SSS +   C     G + H P 
Sbjct: 516 NPGVLPRSTTPFKDFIKDL--EEKQIDRYCFTCWIPKTSSSHHCSQCDKCVDGFDHHCPW 573

Query: 631 I 633
           I
Sbjct: 574 I 574


>AF063007-7|AAC16428.1|  659|Caenorhabditis elegans Hypothetical
           protein R119.5 protein.
          Length = 659

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = +3

Query: 549 HGSNSEFFQELDQLCSDPEREEQTRTIDSHKETEKRACSFDTPHTS 686
           +G  SE  QEL     +P+    T T     E E+  CS D   T+
Sbjct: 527 NGDLSEDEQELSDALEEPQESPSTSTESQVSEDEEPCCSTDPASTT 572


>AF022985-13|AAB69968.1|  375|Caenorhabditis elegans Hypothetical
           protein T15B7.15 protein.
          Length = 375

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
 Frame = +3

Query: 558 NSEFFQELDQLCSDPE-REEQTR--TIDSHKETEKR 656
           NS+  Q++  L  D   RE+QTR  TIDSHK   K+
Sbjct: 295 NSDKCQKMTSLLEDQLLREQQTRKATIDSHKAQNKK 330


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,968,521
Number of Sequences: 27780
Number of extensions: 415068
Number of successful extensions: 1468
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1468
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2050970610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)