Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0072
         (470 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69718-1|CAA93535.1|  119|Caenorhabditis elegans Hypothetical pr...    28   3.9  
DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-t...    27   5.1  
AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-t...    27   5.1  
AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel...    27   5.1  
AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel...    27   5.1  
AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel...    27   5.1  
U39644-2|AAA80360.2|  966|Caenorhabditis elegans Hypothetical pr...    27   9.0  

>Z69718-1|CAA93535.1|  119|Caenorhabditis elegans Hypothetical
           protein W06D11.2 protein.
          Length = 119

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 19/73 (26%), Positives = 39/73 (53%)
 Frame = +2

Query: 248 NNCIALRSINIYITFIFHSLSKLLSLQKYPNV*KYSGQKLKSSPRRVR*RHSAVEIITRV 427
           N  +A  +I+  + FIF SLS +++L K P+  K + Q+++   + ++      ++I R+
Sbjct: 35  NPRVAHPAIHQTVVFIFDSLSSIIALNKLPHT-KENRQQVECGFKSMQ---YLEDLIIRI 90

Query: 428 EITNENSTVTEGG 466
            +  E+  V   G
Sbjct: 91  VVRGEDPAVIHEG 103


>DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-type
            voltage-gatedion channel alpha-1 subunit protein.
          Length = 1797

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 379  RRRLQLLSTIFSYVWIFL 326
            R R+ LL T+F  +WIFL
Sbjct: 1264 RNRVDLLITVFGVIWIFL 1281


>AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-type
            voltage-gatedion channel alpha-1 subunit protein.
          Length = 1831

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 379  RRRLQLLSTIFSYVWIFL 326
            R R+ LL T+F  +WIFL
Sbjct: 1298 RNRVDLLITVFGVIWIFL 1315


>AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel
            type/putative nematodecalcium channel protein 1, isoform
            a protein.
          Length = 1562

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 379  RRRLQLLSTIFSYVWIFL 326
            R R+ LL T+F  +WIFL
Sbjct: 1356 RNRVDLLITVFGVIWIFL 1373


>AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel
            type/putative nematodecalcium channel protein 1, isoform
            c protein.
          Length = 1913

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 379  RRRLQLLSTIFSYVWIFL 326
            R R+ LL T+F  +WIFL
Sbjct: 1409 RNRVDLLITVFGVIWIFL 1426


>AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel
            type/putative nematodecalcium channel protein 1, isoform
            d protein.
          Length = 1861

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 379  RRRLQLLSTIFSYVWIFL 326
            R R+ LL T+F  +WIFL
Sbjct: 1328 RNRVDLLITVFGVIWIFL 1345


>U39644-2|AAA80360.2|  966|Caenorhabditis elegans Hypothetical
           protein T10E10.4 protein.
          Length = 966

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -3

Query: 378 GDDFSFCPLYFHTFGYFCNDNNFDK 304
           G  FS CP  FH  G FC  ++ DK
Sbjct: 922 GRCFSQCPRGFHESGAFCMHDDEDK 946


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,142,611
Number of Sequences: 27780
Number of extensions: 164782
Number of successful extensions: 355
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 355
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 850313440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)