Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0070
         (454 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81546-1|CAB04449.2|  859|Caenorhabditis elegans Hypothetical pr...    29   1.6  
U50071-1|AAA93442.1|   87|Caenorhabditis elegans Hypothetical pr...    29   2.1  
AF016443-12|AAC24279.2|  340|Caenorhabditis elegans Seven tm rec...    27   6.4  
Z77657-7|CAH60768.1|  320|Caenorhabditis elegans Hypothetical pr...    27   8.4  
Z72508-6|CAA96643.1|  415|Caenorhabditis elegans Hypothetical pr...    27   8.4  
AC006632-6|AAK85469.2|  123|Caenorhabditis elegans Hypothetical ...    27   8.4  

>Z81546-1|CAB04449.2|  859|Caenorhabditis elegans Hypothetical
           protein F53A2.1 protein.
          Length = 859

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 17/52 (32%), Positives = 22/52 (42%)
 Frame = +2

Query: 74  TFLMSNSSLALVKQLKKT*FELRISSEKNLKSSLRSYLIVFIIIG*VETNSP 229
           TF   N S    K L      L    +KN K    SYL++ +I G + T  P
Sbjct: 62  TFFWGNFSFLCPKNLLSVQRSLYFRYQKNAKMIFWSYLVILLIPGVLSTTCP 113


>U50071-1|AAA93442.1|   87|Caenorhabditis elegans Hypothetical
           protein B0350.3 protein.
          Length = 87

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
 Frame = -2

Query: 171 LDFKFFSEDILNSNYVFFNCFTNASELFDIRNVSI---NIFQYFIRY-SYFRHSSNLI*K 4
           L  KFF+   L + ++FF+ F      F+I NVS    N  +Y I+Y +YF+ S+    K
Sbjct: 25  LAIKFFN---LKNEFLFFSKFCKKQPKFEILNVSYCSQNFQKYRIQYLNYFKISTFFSIK 81

Query: 3   K 1
           K
Sbjct: 82  K 82


>AF016443-12|AAC24279.2|  340|Caenorhabditis elegans Seven tm
           receptor protein 229 protein.
          Length = 340

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 17/69 (24%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
 Frame = -2

Query: 420 LVYLIQ*KFNFTGLFSHFVIVFTILYE*QIHFN-VNFRSRKSIVN*LKSFL*EDGDEKNV 244
           L+YLI  K   T LF  ++++FT ++E  +H+  ++   +  I++    ++ E    K++
Sbjct: 26  LIYLIFKKSPKTMLFYKYLLIFTSVFE--LHYGIIDLLIKPEIISEKTFWIAETNSSKSL 83

Query: 243 FIAQMGELV 217
               +GE++
Sbjct: 84  VSMTVGEVL 92


>Z77657-7|CAH60768.1|  320|Caenorhabditis elegans Hypothetical
           protein F08H9.12 protein.
          Length = 320

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
 Frame = -3

Query: 401 ENLILRVYSRIL--LLSLLYCMNS-KYILTLILDLVKV*LINLRAFYKRMVTKKMFLL 237
           E+ I  V  +I+  LL LL   NS KY+LTL     ++ L+NL      ++  K FLL
Sbjct: 101 ESYIFHVIQQIIHILLFLLAIANSIKYLLTLKFSNSQIFLLNLVKKLNVVLISKDFLL 158


>Z72508-6|CAA96643.1|  415|Caenorhabditis elegans Hypothetical
           protein F28H7.7 protein.
          Length = 415

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +1

Query: 247 IFFVTILL*KALKLINYTFTRSKINV-KMYLLFIQYSKD 360
           +FFV + +  ++++ NY F  S   +  +YL  IQ  KD
Sbjct: 18  LFFVILSVLYSIEVFNYDFVSSNFGISSIYLTHIQKYKD 56


>AC006632-6|AAK85469.2|  123|Caenorhabditis elegans Hypothetical
           protein F28A10.3 protein.
          Length = 123

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 143 FLIRIMFFLIVSLMLVNCLTLETSASI 63
           FL RI+FF+I     + CL + T+ ++
Sbjct: 29  FLTRILFFVIAGFSALTCLFMVTAVTL 55


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,509,880
Number of Sequences: 27780
Number of extensions: 143383
Number of successful extensions: 358
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 358
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 799252350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)