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Last updated: 2019/10/06
 
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0001
         (944 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81077-5|CAB03065.1|  151|Caenorhabditis elegans Hypothetical pr...    85   7e-17

>Z81077-5|CAB03065.1|  151|Caenorhabditis elegans Hypothetical
           protein F36A2.6 protein.
          Length = 151

 Score = 85.0 bits (201), Expect = 7e-17
 Identities = 40/74 (54%), Positives = 52/74 (70%)
 Frame = +2

Query: 458 EQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEAPPNEKPEIVKTHLRNMIIVPEMV 637
           EQ  +L+          GLKRK +AL+ K+++AKK A   EKP  VKTHLR+MII+PE+V
Sbjct: 37  EQFTKLLPCRMRRRLDRGLKRKHLALIAKVQKAKKAAGVLEKPATVKTHLRDMIILPELV 96

Query: 638 GSIVGIYNGKTFNQ 679
           G ++GIYNGK FNQ
Sbjct: 97  GGVIGIYNGKVFNQ 110



 Score = 49.2 bits (112), Expect = 4e-06
 Identities = 24/43 (55%), Positives = 30/43 (69%)
 Frame = +3

Query: 171 LKKKRIFRKFTYRGVDLDQLLDMPKLVFLSVQYLKCSVSKKFE 299
           LKKKR FRKF YRGVDLDQLLDM +  F   + L C + ++ +
Sbjct: 12  LKKKRTFRKFMYRGVDLDQLLDMSREQF--TKLLPCRMRRRLD 52


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,297,567
Number of Sequences: 27780
Number of extensions: 369524
Number of successful extensions: 795
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 795
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2444174194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

The construction of this database has been supported by
Grant-in-Aid for Publication of Scientific Research Results,
JSPS, Japan (1999-2003, 2005-2018).

The EST sequencing was supported by the Genome Analysis Program,National Bioresource Project (NBRP),
Grants-in-Aid for Scientific Research, MEXT,and the Agrigenome Program, NIAS/MAFF.
The maintenance and distribution of the DNA clones are supported by the National Bioresource Project (NBRP).