Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0120
         (684 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr...    30   1.8  
U50308-3|AAW88404.1| 1392|Caenorhabditis elegans Gut granule los...    30   1.8  
AF106579-9|AAC78202.1|  327|Caenorhabditis elegans Serpentine re...    29   2.3  
AL132853-9|CAB60444.4| 1467|Caenorhabditis elegans Hypothetical ...    29   3.1  
U39676-5|AAN60531.1| 2329|Caenorhabditis elegans Hypothetical pr...    29   4.1  
U39676-4|AAN60532.1| 2747|Caenorhabditis elegans Hypothetical pr...    29   4.1  
U41994-9|AAK31523.1|  786|Caenorhabditis elegans Hypothetical pr...    28   5.4  
AF047655-8|AAC04397.1|  227|Caenorhabditis elegans Hypothetical ...    28   7.1  
AC006633-5|AAO21429.1|  506|Caenorhabditis elegans Prion-like-(q...    27   9.4  

>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical protein
            K06A9.1b protein.
          Length = 2232

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 19/64 (29%), Positives = 31/64 (48%)
 Frame = +1

Query: 409  SYSEGSTSAQTVNNRTGRAVNLPTIPSSAQAGNTCGGGRLCKTRYNTTAPMYGVSLTSGQ 588
            S S+GS++  TV + T   V+  T+PSS     +   G +  T  + ++     S  +G 
Sbjct: 1896 STSQGSSAGSTVASSTAGLVSTSTVPSSTGTMGSTSSGTVGST-ISESSTAASTSSQTGS 1954

Query: 589  PVTI 600
             VTI
Sbjct: 1955 TVTI 1958



 Score = 28.7 bits (61), Expect = 4.1
 Identities = 18/64 (28%), Positives = 31/64 (48%)
 Frame = +1

Query: 409  SYSEGSTSAQTVNNRTGRAVNLPTIPSSAQAGNTCGGGRLCKTRYNTTAPMYGVSLTSGQ 588
            S S+GS++  TV + T   V+  T+PSS     +   G +  T  + ++     S  +G 
Sbjct: 1574 STSQGSSAGSTVASSTAGLVSTSTVPSSTGTMGSTSSGTVGST-ISESSTTASASSQTGS 1632

Query: 589  PVTI 600
             VT+
Sbjct: 1633 TVTM 1636



 Score = 27.9 bits (59), Expect = 7.1
 Identities = 18/64 (28%), Positives = 31/64 (48%)
 Frame = +1

Query: 409  SYSEGSTSAQTVNNRTGRAVNLPTIPSSAQAGNTCGGGRLCKTRYNTTAPMYGVSLTSGQ 588
            S S+GS++  TV + T   V+  T+PSS     +   G +  T  + ++     S  +G 
Sbjct: 1657 STSQGSSAGSTVASSTTGLVSTSTVPSSTGTMGSTSSGTVGST-ISESSTAASASSQTGS 1715

Query: 589  PVTI 600
             VT+
Sbjct: 1716 TVTM 1719



 Score = 27.5 bits (58), Expect = 9.4
 Identities = 18/64 (28%), Positives = 30/64 (46%)
 Frame = +1

Query: 409  SYSEGSTSAQTVNNRTGRAVNLPTIPSSAQAGNTCGGGRLCKTRYNTTAPMYGVSLTSGQ 588
            S S+GS+   TV + T   V+  T+PSS     +   G +  T  + ++     S  +G 
Sbjct: 1813 STSQGSSVGSTVASSTAGLVSTSTVPSSTGTMGSTSSGTVGST-ISESSTTASASSQTGS 1871

Query: 589  PVTI 600
             VT+
Sbjct: 1872 TVTM 1875


>U50308-3|AAW88404.1| 1392|Caenorhabditis elegans Gut granule loss
            protein 4 protein.
          Length = 1392

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 19/69 (27%), Positives = 31/69 (44%)
 Frame = +1

Query: 289  RHLINRAIKSGPWSQSSRQGRAARTLDPAIMRRALLDAHSSYSEGSTSAQTVNNRTGRAV 468
            R  ++ A +  P S S R+G+    L PA+     + +  S  E         +   + V
Sbjct: 1279 REALSAAFRHVPMSDSMRKGKQIAQLWPAVWNDERVQSSLSIDEKIAMLDGFTS-ASKPV 1337

Query: 469  NLPTIPSSA 495
            + PTIPSS+
Sbjct: 1338 SCPTIPSSS 1346


>AF106579-9|AAC78202.1|  327|Caenorhabditis elegans Serpentine
           receptor, class t protein34 protein.
          Length = 327

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -2

Query: 140 FLIILIYFQRNYITKQLLIISAAHYCTQV 54
           FL   IY   NYIT  LLI+ +  +C Q+
Sbjct: 257 FLTCAIYVIENYITVPLLIVLSGQFCWQL 285


>AL132853-9|CAB60444.4| 1467|Caenorhabditis elegans Hypothetical
           protein Y80D3A.2 protein.
          Length = 1467

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 16/34 (47%), Positives = 18/34 (52%)
 Frame = -2

Query: 320 PDLIARFIRCLGYGEPSGPGQSELSKASPHAYFN 219
           PD +   I  LGYGEP     S+LS A P   FN
Sbjct: 695 PDWLTDVI--LGYGEPDSAHYSKLSSAVPELDFN 726


>U39676-5|AAN60531.1| 2329|Caenorhabditis elegans Hypothetical protein
            C23F12.1a protein.
          Length = 2329

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 20/89 (22%), Positives = 44/89 (49%)
 Frame = -1

Query: 462  STGSIINSLRASRSFRVRAMSVQERSSHDGRVQCPRGSALPGRLTPRS*FDSSVYKMSRI 283
            +TG+ +  +       ++ ++ +  S+ + RV+ P+G+ LP  +T RS  + +++  + +
Sbjct: 1331 ATGAGLERIPVDEETEIQILTDEIDSAPEARVRDPQGNDLPVNVT-RSRENETLHIATYV 1389

Query: 282  RRAVWTRTIRAFQGISPCIF*PWTAICHD 196
             + V    I  F    P    P+TA  +D
Sbjct: 1390 PKCVGNHLIDIFLQGEPIAGSPFTAKAYD 1418


>U39676-4|AAN60532.1| 2747|Caenorhabditis elegans Hypothetical protein
            C23F12.1b protein.
          Length = 2747

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 20/89 (22%), Positives = 44/89 (49%)
 Frame = -1

Query: 462  STGSIINSLRASRSFRVRAMSVQERSSHDGRVQCPRGSALPGRLTPRS*FDSSVYKMSRI 283
            +TG+ +  +       ++ ++ +  S+ + RV+ P+G+ LP  +T RS  + +++  + +
Sbjct: 1331 ATGAGLERIPVDEETEIQILTDEIDSAPEARVRDPQGNDLPVNVT-RSRENETLHIATYV 1389

Query: 282  RRAVWTRTIRAFQGISPCIF*PWTAICHD 196
             + V    I  F    P    P+TA  +D
Sbjct: 1390 PKCVGNHLIDIFLQGEPIAGSPFTAKAYD 1418


>U41994-9|AAK31523.1|  786|Caenorhabditis elegans Hypothetical
           protein F59A6.3 protein.
          Length = 786

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 22/86 (25%), Positives = 37/86 (43%)
 Frame = +1

Query: 316 SGPWSQSSRQGRAARTLDPAIMRRALLDAHSSYSEGSTSAQTVNNRTGRAVNLPTIPSSA 495
           SGP + S      + T  P+      +   S    GST++ T+++  G  V   + PS++
Sbjct: 587 SGPSTTSG--STKSTTSGPSTTSGKNISTVSGKLTGSTTSATISSAFGGNVTFTSKPSNS 644

Query: 496 QAGNTCGGGRLCKTRYNTTAPMYGVS 573
             G T  G    +   NTT+   G +
Sbjct: 645 SGGTTSSGKNFSQ---NTTSAANGTT 667


>AF047655-8|AAC04397.1|  227|Caenorhabditis elegans Hypothetical
           protein C17B7.3 protein.
          Length = 227

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 616 DLLQQVVFEVCESSEWSVIRRH 681
           D L++ V E+C   EW  +R H
Sbjct: 188 DCLKKEVIEICSQQEWDKLREH 209


>AC006633-5|AAO21429.1|  506|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 34,
           isoform b protein.
          Length = 506

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = -3

Query: 583 QKSKTPRTSEQLCCNGSCRDGHRRRCYRLVRT 488
           +K+   +TS++  CN S  + H  +C+  ++T
Sbjct: 450 RKNDNDQTSKECRCNSSHHNSHHNKCFLPIKT 481


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,070,426
Number of Sequences: 27780
Number of extensions: 351355
Number of successful extensions: 1055
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 973
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1055
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)