Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0061
         (673 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L18963-1|AAC14457.1|  152|Caenorhabditis elegans unc-60 protein.      110   1e-24
AF024494-2|AAL02463.1|  152|Caenorhabditis elegans Uncoordinated...   110   1e-24
L18963-2|AAC14458.1|  165|Caenorhabditis elegans unc-60 protein.       79   4e-15
AF024494-3|AAL02461.1|  165|Caenorhabditis elegans Uncoordinated...    79   4e-15
AF024494-1|AAL02462.2|  212|Caenorhabditis elegans Uncoordinated...    76   2e-14
Z48717-10|CAA88612.2|  423|Caenorhabditis elegans Hypothetical p...    29   2.3  
Z48584-9|CAA88478.2|  423|Caenorhabditis elegans Hypothetical pr...    29   2.3  
Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical pr...    29   3.0  
AC025723-3|AAK29935.1|  254|Caenorhabditis elegans Hypothetical ...    29   3.0  
AC024801-11|AAN84814.2|  138|Caenorhabditis elegans Hypothetical...    29   3.0  
AC024792-3|AAF60684.2|  388|Caenorhabditis elegans Hypothetical ...    28   6.9  
Z82257-1|CAB05120.2| 1043|Caenorhabditis elegans Hypothetical pr...    27   9.2  
U80450-11|AAM15595.1|  664|Caenorhabditis elegans Temporarily as...    27   9.2  
U80450-9|AAK77615.1| 1112|Caenorhabditis elegans Temporarily ass...    27   9.2  
U80450-8|AAK77616.1|  949|Caenorhabditis elegans Temporarily ass...    27   9.2  
AJ271057-1|CAB65957.1| 1043|Caenorhabditis elegans Ack related n...    27   9.2  

>L18963-1|AAC14457.1|  152|Caenorhabditis elegans unc-60 protein.
          Length = 152

 Score =  110 bits (264), Expect = 1e-24
 Identities = 59/152 (38%), Positives = 92/152 (60%), Gaps = 5/152 (3%)
 Frame = +1

Query: 58  MASGVTVSDVCKTTYEEIKKDKKHRYVVFYI-RDEKQIDVETVGERNAEYEQFLEDLQK- 231
           MASGV V   CK  Y+ +    +H Y++F I +++  I VE VGE+NA Y +F+E+++K 
Sbjct: 1   MASGVKVDPSCKNAYDLLHNKHQHSYIIFKIDKNDTAIVVEKVGEKNAPYAEFVEEMKKL 60

Query: 232 -GGTGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKS 408
                ECRY   D E T Q QG    S   K+  + +CPD A V+++MLY+SS  ALK S
Sbjct: 61  VEDGKECRYAAVDVEVTVQRQGAEGTSTLNKVIFVQYCPDNAPVRRRMLYASSVRALKAS 120

Query: 409 LVGVQK--YIQATDLSEASQEAVEEKLRATDR 498
           L G++    +QA+++S+  +++V+  L +  R
Sbjct: 121 L-GLESLFQVQASEMSDLDEKSVKSDLMSNQR 151


>AF024494-2|AAL02463.1|  152|Caenorhabditis elegans Uncoordinated
           protein 60, isoform c protein.
          Length = 152

 Score =  110 bits (264), Expect = 1e-24
 Identities = 59/152 (38%), Positives = 92/152 (60%), Gaps = 5/152 (3%)
 Frame = +1

Query: 58  MASGVTVSDVCKTTYEEIKKDKKHRYVVFYI-RDEKQIDVETVGERNAEYEQFLEDLQK- 231
           MASGV V   CK  Y+ +    +H Y++F I +++  I VE VGE+NA Y +F+E+++K 
Sbjct: 1   MASGVKVDPSCKNAYDLLHNKHQHSYIIFKIDKNDTAIVVEKVGEKNAPYAEFVEEMKKL 60

Query: 232 -GGTGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKS 408
                ECRY   D E T Q QG    S   K+  + +CPD A V+++MLY+SS  ALK S
Sbjct: 61  VEDGKECRYAAVDVEVTVQRQGAEGTSTLNKVIFVQYCPDNAPVRRRMLYASSVRALKAS 120

Query: 409 LVGVQK--YIQATDLSEASQEAVEEKLRATDR 498
           L G++    +QA+++S+  +++V+  L +  R
Sbjct: 121 L-GLESLFQVQASEMSDLDEKSVKSDLMSNQR 151


>L18963-2|AAC14458.1|  165|Caenorhabditis elegans unc-60 protein.
          Length = 165

 Score = 78.6 bits (185), Expect = 4e-15
 Identities = 53/160 (33%), Positives = 88/160 (55%), Gaps = 18/160 (11%)
 Frame = +1

Query: 58  MASGVTVSDVCKTTYEEIKKDKK-HRYVVFYIRDEKQIDVETVGERN------------- 195
           M+SGV V    +T+++++ + +K +RY++F I DE ++ VE    ++             
Sbjct: 1   MSSGVMVDPDVQTSFQKLSEGRKEYRYIIFKI-DENKVIVEAAVTQDQLGITGDDYDDSS 59

Query: 196 -AEYEQFLEDLQK--GGTGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKK 366
            A +++F+ED++       +CRY +FDF++T    G    SK  K+  +  CPD A +KK
Sbjct: 60  KAAFDKFVEDVKSRTDNLTDCRYAVFDFKFTCSRVGAG-TSKMDKIIFLQICPDGASIKK 118

Query: 367 KMLYSSSFDALKKSL-VGVQKYIQATDLSEASQEAVEEKL 483
           KM+Y+SS  A+K SL  G     Q +D SE S + +  KL
Sbjct: 119 KMVYASSAAAIKTSLGTGKILQFQVSDESEMSHKELLNKL 158


>AF024494-3|AAL02461.1|  165|Caenorhabditis elegans Uncoordinated
           protein 60, isoform a protein.
          Length = 165

 Score = 78.6 bits (185), Expect = 4e-15
 Identities = 53/160 (33%), Positives = 88/160 (55%), Gaps = 18/160 (11%)
 Frame = +1

Query: 58  MASGVTVSDVCKTTYEEIKKDKK-HRYVVFYIRDEKQIDVETVGERN------------- 195
           M+SGV V    +T+++++ + +K +RY++F I DE ++ VE    ++             
Sbjct: 1   MSSGVMVDPDVQTSFQKLSEGRKEYRYIIFKI-DENKVIVEAAVTQDQLGITGDDYDDSS 59

Query: 196 -AEYEQFLEDLQK--GGTGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKK 366
            A +++F+ED++       +CRY +FDF++T    G    SK  K+  +  CPD A +KK
Sbjct: 60  KAAFDKFVEDVKSRTDNLTDCRYAVFDFKFTCSRVGAG-TSKMDKIIFLQICPDGASIKK 118

Query: 367 KMLYSSSFDALKKSL-VGVQKYIQATDLSEASQEAVEEKL 483
           KM+Y+SS  A+K SL  G     Q +D SE S + +  KL
Sbjct: 119 KMVYASSAAAIKTSLGTGKILQFQVSDESEMSHKELLNKL 158


>AF024494-1|AAL02462.2|  212|Caenorhabditis elegans Uncoordinated
           protein 60, isoform b protein.
          Length = 212

 Score = 76.2 bits (179), Expect = 2e-14
 Identities = 51/154 (33%), Positives = 85/154 (55%), Gaps = 18/154 (11%)
 Frame = +1

Query: 58  MASGVTVSDVCKTTYEEIKKDKK-HRYVVFYIRDEKQIDVETVGERN------------- 195
           M+SGV V    +T+++++ + +K +RY++F I DE ++ VE    ++             
Sbjct: 1   MSSGVMVDPDVQTSFQKLSEGRKEYRYIIFKI-DENKVIVEAAVTQDQLGITGDDYDDSS 59

Query: 196 -AEYEQFLEDLQK--GGTGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKK 366
            A +++F+ED++       +CRY +FDF++T    G    SK  K+  +  CPD A +KK
Sbjct: 60  KAAFDKFVEDVKSRTDNLTDCRYAVFDFKFTCSRVGAG-TSKMDKIIFLQICPDGASIKK 118

Query: 367 KMLYSSSFDALKKSL-VGVQKYIQATDLSEASQE 465
           KM+Y+SS  A+K SL  G     Q +D SE S +
Sbjct: 119 KMVYASSAAAIKTSLGTGKILQFQVSDESEMSHK 152



 Score = 47.6 bits (108), Expect = 8e-06
 Identities = 28/74 (37%), Positives = 47/74 (63%), Gaps = 2/74 (2%)
 Frame = +1

Query: 283 QCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQK--YIQATDLSEA 456
           Q    SE S K+   L++ CPD A V+++MLY+SS  ALK SL G++    +QA+++S+ 
Sbjct: 142 QVSDESEMSHKE---LLNNCPDNAPVRRRMLYASSVRALKASL-GLESLFQVQASEMSDL 197

Query: 457 SQEAVEEKLRATDR 498
            +++V+  L +  R
Sbjct: 198 DEKSVKSDLMSNQR 211


>Z48717-10|CAA88612.2|  423|Caenorhabditis elegans Hypothetical
           protein ZK1321.4 protein.
          Length = 423

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -3

Query: 272 SKSNRPYLHSPVPPFCRSSRNCSYSALRSPTVST 171
           S  N P  HSP PPF  S  N SY+ ++  T +T
Sbjct: 188 SHHNIPIRHSPAPPFTTS--NSSYNNIKKSTDNT 219


>Z48584-9|CAA88478.2|  423|Caenorhabditis elegans Hypothetical
           protein ZK1321.4 protein.
          Length = 423

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -3

Query: 272 SKSNRPYLHSPVPPFCRSSRNCSYSALRSPTVST 171
           S  N P  HSP PPF  S  N SY+ ++  T +T
Sbjct: 188 SHHNIPIRHSPAPPFTTS--NSSYNNIKKSTDNT 219


>Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical protein
            F32H2.5 protein.
          Length = 2586

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -2

Query: 456  RFREVGRLDVLLNSDKGLFQSVERARVQHLLLD 358
            RF E+G++D+  NS  G+ + ++   V  +LLD
Sbjct: 1828 RFLEIGKVDLSQNSSLGMAKLLDNVSVHGILLD 1860


>AC025723-3|AAK29935.1|  254|Caenorhabditis elegans Hypothetical
           protein Y54F10AM.6 protein.
          Length = 254

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -2

Query: 567 RQGRSVGERVRFRRELVCKCC 505
           R+GR  G+ ++FR E VC+CC
Sbjct: 196 RKGR--GKNIKFRTEKVCRCC 214


>AC024801-11|AAN84814.2|  138|Caenorhabditis elegans Hypothetical
           protein Y50D7A.10 protein.
          Length = 138

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 16/65 (24%), Positives = 31/65 (47%)
 Frame = +1

Query: 286 CQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQE 465
           C+  S+      + L+ +CP+ +  + +MLY+ S + +      V K  +  D+ E   E
Sbjct: 74  CKKHSDERISYPMLLIYYCPNGSSPELQMLYAGSRNFIVNE-CHVSKNTEIRDIDEIDDE 132

Query: 466 AVEEK 480
            +E K
Sbjct: 133 LLESK 137


>AC024792-3|AAF60684.2|  388|Caenorhabditis elegans Hypothetical
           protein Y48G1A.3 protein.
          Length = 388

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 274 YTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLY 378
           + H   G+ E    + +F  S  PD+ K KKK+LY
Sbjct: 161 FIHSLCGSHEIHPVKIIFRFSKYPDSLKYKKKILY 195


>Z82257-1|CAB05120.2| 1043|Caenorhabditis elegans Hypothetical
           protein C01C7.1 protein.
          Length = 1043

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +3

Query: 447 LGSVSGGRRREAPRHRSPINSIYTRARDETEPA 545
           L ++S  R+   P  R P+ ++Y R +D   PA
Sbjct: 688 LTALSSSRKDPIPAPRGPVAAVYARGKDIPTPA 720


>U80450-11|AAM15595.1|  664|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 163, isoform d protein.
          Length = 664

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -1

Query: 496 DRWRGASLRRPPETLPRGRSLGCTSELRQGT 404
           +RWRG    +PP   PR  S    + L +GT
Sbjct: 435 ERWRGRMRGKPPTPPPRESSASPVNSLPRGT 465


>U80450-9|AAK77615.1| 1112|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 163, isoform a protein.
          Length = 1112

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -1

Query: 496 DRWRGASLRRPPETLPRGRSLGCTSELRQGT 404
           +RWRG    +PP   PR  S    + L +GT
Sbjct: 435 ERWRGRMRGKPPTPPPRESSASPVNSLPRGT 465


>U80450-8|AAK77616.1|  949|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 163, isoform c protein.
          Length = 949

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -1

Query: 496 DRWRGASLRRPPETLPRGRSLGCTSELRQGT 404
           +RWRG    +PP   PR  S    + L +GT
Sbjct: 435 ERWRGRMRGKPPTPPPRESSASPVNSLPRGT 465


>AJ271057-1|CAB65957.1| 1043|Caenorhabditis elegans Ack related
           non-receptor tyrosinekinase protein.
          Length = 1043

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +3

Query: 447 LGSVSGGRRREAPRHRSPINSIYTRARDETEPA 545
           L ++S  R+   P  R P+ ++Y R +D   PA
Sbjct: 688 LTALSSSRKDPIPAPRGPVAAVYARGKDIPTPA 720


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,503,774
Number of Sequences: 27780
Number of extensions: 274849
Number of successful extensions: 1086
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 997
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1076
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)