Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0058
         (423 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88308-7|AAB42322.1|  207|Caenorhabditis elegans Ribosomal prote...   152   9e-38
U88308-8|AAO61436.1|   88|Caenorhabditis elegans Ribosomal prote...    94   3e-20
Z82083-6|CAB04974.1|  388|Caenorhabditis elegans Hypothetical pr...    29   1.8  
U97196-13|AAK68666.1|  430|Caenorhabditis elegans Altered averme...    27   7.3  
U41113-1|AAC25482.1|  430|Caenorhabditis elegans inhibitory amin...    27   7.3  

>U88308-7|AAB42322.1|  207|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 13, isoform a protein.
          Length = 207

 Score =  152 bits (369), Expect = 9e-38
 Identities = 71/137 (51%), Positives = 93/137 (67%), Gaps = 1/137 (0%)
 Frame = +1

Query: 13  KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 192
           +GN M+ N HF K W + +KTWF+QPAR+ RR+QNR               LR +VRCP 
Sbjct: 4   RGNQMLGNAHFRKHWHKRIKTWFDQPARKLRRRQNRQAKAVEIAPRPVAGLLRSVVRCPQ 63

Query: 193 VRYHTKVRAGRGFTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRAR 372
            RY+TK R GRGF+L+E++AAG++   ARTIGIAVD RR NK+ E L+ N  R+KEY+A+
Sbjct: 64  KRYNTKTRLGRGFSLQELKAAGISQAQARTIGIAVDVRRTNKTAEGLKANADRLKEYKAK 123

Query: 373 LILFP-KGKKVLKGDAN 420
           LILFP K     KGD++
Sbjct: 124 LILFPKKASAPKKGDSS 140


>U88308-8|AAO61436.1|   88|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 13, isoform b protein.
          Length = 88

 Score = 94.3 bits (224), Expect = 3e-20
 Identities = 41/84 (48%), Positives = 54/84 (64%)
 Frame = +1

Query: 13  KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 192
           +GN M+ N HF K W + +KTWF+QPAR+ RR+QNR               LR +VRCP 
Sbjct: 4   RGNQMLGNAHFRKHWHKRIKTWFDQPARKLRRRQNRQAKAVEIAPRPVAGLLRSVVRCPQ 63

Query: 193 VRYHTKVRAGRGFTLREIRAAGLN 264
            RY+TK R GRGF+L+E++AA  N
Sbjct: 64  KRYNTKTRLGRGFSLQELKAAEEN 87


>Z82083-6|CAB04974.1|  388|Caenorhabditis elegans Hypothetical
           protein ZK1010.8 protein.
          Length = 388

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 14/32 (43%), Positives = 23/32 (71%), Gaps = 2/32 (6%)
 Frame = -2

Query: 149 RGAT-ALAFF-ILFCFLRYRRAGWLNQVLTNL 60
           RGAT A+A + I++CF+++   GW  QV+ N+
Sbjct: 9   RGATIAIAVWNIIYCFIQFGILGWQFQVVKNI 40


>U97196-13|AAK68666.1|  430|Caenorhabditis elegans Altered
           avermectin sensitivityprotein 14, isoform b protein.
          Length = 430

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 16/52 (30%), Positives = 29/52 (55%)
 Frame = +2

Query: 68  LKLGLTSQLDDTAESKIE*RKLRP*LHVLQLGRYVL*CDAQLFGTILKYAPV 223
           + LG+T+ L  T ++     KL P  ++  +  ++  C A +FG +L+YA V
Sbjct: 286 VSLGVTTLLTMTTQASGINSKLPPVSYIKAVDVWIGVCLAFIFGALLEYAVV 337


>U41113-1|AAC25482.1|  430|Caenorhabditis elegans inhibitory amino
           acid receptorsubunit gbr-2B protein.
          Length = 430

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 16/52 (30%), Positives = 29/52 (55%)
 Frame = +2

Query: 68  LKLGLTSQLDDTAESKIE*RKLRP*LHVLQLGRYVL*CDAQLFGTILKYAPV 223
           + LG+T+ L  T ++     KL P  ++  +  ++  C A +FG +L+YA V
Sbjct: 286 VSLGVTTLLTMTTQASGINTKLPPVSYIKAVDVWIGVCLAFIFGALLEYAVV 337


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,997,898
Number of Sequences: 27780
Number of extensions: 199190
Number of successful extensions: 490
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 692685370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)