Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0005
         (675 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40414-2|AAA81405.2|  634|Caenorhabditis elegans Hypothetical pr...    30   1.3  
AF194964-1|AAF28314.1|  632|Caenorhabditis elegans polo-like kin...    30   1.7  
AC024201-9|AAF36014.1|  632|Caenorhabditis elegans Polo kinase p...    30   1.7  
Z71265-6|CAA95837.1|  399|Caenorhabditis elegans Hypothetical pr...    29   3.0  
Z71258-17|CAA95787.1|  399|Caenorhabditis elegans Hypothetical p...    29   3.0  
U30248-1|AAC13874.1|  399|Caenorhabditis elegans transcription f...    29   3.0  
U13614-1|AAA21347.1|  399|Caenorhabditis elegans protein ( Caeno...    29   3.0  
Z83127-6|CAB05633.1|  327|Caenorhabditis elegans Hypothetical pr...    28   5.3  
Z80214-6|CAB02266.1|  327|Caenorhabditis elegans Hypothetical pr...    28   5.3  
Z81560-7|CAB76737.2|  188|Caenorhabditis elegans Hypothetical pr...    28   7.0  
U28942-1|AAA68355.2|  441|Caenorhabditis elegans Hypothetical pr...    28   7.0  
AF016428-3|AAO26000.3|  445|Caenorhabditis elegans Ground-like (...    27   9.2  

>U40414-2|AAA81405.2|  634|Caenorhabditis elegans Hypothetical
           protein F53B3.2 protein.
          Length = 634

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = +3

Query: 405 YIAPSSYITPNTYIASGPLGATTYTTPFVQTVPIASTASLP 527
           +I PSS I  N +    P     YTT    T P++ TA LP
Sbjct: 295 FIRPSSIIRNNVWKKVTPSVTPEYTTSVFWTTPMSVTAELP 335


>AF194964-1|AAF28314.1|  632|Caenorhabditis elegans polo-like kinase
           2 protein.
          Length = 632

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
 Frame = +1

Query: 421 PTSLPTPTSQV--ALLEPLPTRHPSCRP-CRSH 510
           PTS     SQ+   LL+P+P+R P+ R  CR H
Sbjct: 253 PTSASAAASQLIRVLLDPVPSRRPNARAVCRDH 285


>AC024201-9|AAF36014.1|  632|Caenorhabditis elegans Polo kinase
           protein 2 protein.
          Length = 632

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
 Frame = +1

Query: 421 PTSLPTPTSQV--ALLEPLPTRHPSCRP-CRSH 510
           PTS     SQ+   LL+P+P+R P+ R  CR H
Sbjct: 253 PTSASAAASQLIRVLLDPVPSRRPNARAVCRDH 285


>Z71265-6|CAA95837.1|  399|Caenorhabditis elegans Hypothetical
           protein M05B5.5a protein.
          Length = 399

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +1

Query: 403 ATSLLAPTSLPTPTSQVALLEPLPTRHPS 489
           +TS  AP++ P PTS   +LE  PT  P+
Sbjct: 100 STSTTAPSTAPAPTSTTDVLELKPTTAPA 128


>Z71258-17|CAA95787.1|  399|Caenorhabditis elegans Hypothetical
           protein M05B5.5a protein.
          Length = 399

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +1

Query: 403 ATSLLAPTSLPTPTSQVALLEPLPTRHPS 489
           +TS  AP++ P PTS   +LE  PT  P+
Sbjct: 100 STSTTAPSTAPAPTSTTDVLELKPTTAPA 128


>U30248-1|AAC13874.1|  399|Caenorhabditis elegans transcription
           factor E12/47 homolog protein.
          Length = 399

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +1

Query: 403 ATSLLAPTSLPTPTSQVALLEPLPTRHPS 489
           +TS  AP++ P PTS   +LE  PT  P+
Sbjct: 100 STSTTAPSTAPAPTSTTDVLELKPTTAPA 128


>U13614-1|AAA21347.1|  399|Caenorhabditis elegans protein (
           Caenorhabditis elegansN2 basic-helix-loop-helix
           transcription factor E12/47homolog mRNA, complete cds.
           ).
          Length = 399

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +1

Query: 403 ATSLLAPTSLPTPTSQVALLEPLPTRHPS 489
           +TS  AP++ P PTS   +LE  PT  P+
Sbjct: 100 STSTTAPSTAPAPTSTTDVLELKPTTAPA 128


>Z83127-6|CAB05633.1|  327|Caenorhabditis elegans Hypothetical
           protein C27D8.1 protein.
          Length = 327

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = +2

Query: 485 LRADRADRIDCITSRRSSSDQEEVCPRAGDNLHRTYYLHR-CSPRSFLSSVQLQFARRSS 661
           L+ADR D++    +    S Q   C  A + LH+T ++HR   P+++   +     +R +
Sbjct: 111 LKADRPDKVFSFATGLGVSCQ---CLEAVEELHKTGFIHRDLKPQNYACGLD---EKRHN 164

Query: 662 CYIL 673
            YIL
Sbjct: 165 IYIL 168


>Z80214-6|CAB02266.1|  327|Caenorhabditis elegans Hypothetical
           protein C27D8.1 protein.
          Length = 327

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = +2

Query: 485 LRADRADRIDCITSRRSSSDQEEVCPRAGDNLHRTYYLHR-CSPRSFLSSVQLQFARRSS 661
           L+ADR D++    +    S Q   C  A + LH+T ++HR   P+++   +     +R +
Sbjct: 111 LKADRPDKVFSFATGLGVSCQ---CLEAVEELHKTGFIHRDLKPQNYACGLD---EKRHN 164

Query: 662 CYIL 673
            YIL
Sbjct: 165 IYIL 168


>Z81560-7|CAB76737.2|  188|Caenorhabditis elegans Hypothetical
           protein K02E2.8a protein.
          Length = 188

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/51 (25%), Positives = 24/51 (47%)
 Frame = +3

Query: 369 FIKKRSPQWPVSYIAPSSYITPNTYIASGPLGATTYTTPFVQTVPIASTAS 521
           F+K  +   P  ++ P   + P T   +  + A T T P   T P+++T +
Sbjct: 7   FVKLAAACIPTQFVTP---LNPGTITTTTTISAPTTTVPITTTNPVSTTTT 54


>U28942-1|AAA68355.2|  441|Caenorhabditis elegans Hypothetical
           protein F56D3.1 protein.
          Length = 441

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 18/35 (51%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +3

Query: 432 PNTYIASGPLGATTYTT-PFVQTVPIASTASLPVA 533
           P T   + P  ATT  T PFVQT P A+ A+LP A
Sbjct: 114 PTTIRTTRPPPATTIRTIPFVQTTP-ATFATLPPA 147


>AF016428-3|AAO26000.3|  445|Caenorhabditis elegans Ground-like (grd
           related) protein18 protein.
          Length = 445

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
 Frame = +3

Query: 279 TYHGKTPLLASTSYVSSIPLISQPIAYSAHFIKKRSPQWPVSYIAPSSYITPN-TYIASG 455
           +Y  + PL  S+SY+++IP   Q  +Y    +    P  P    +  +Y TP+ T+I   
Sbjct: 75  SYQNQQPLQPSSSYLANIPPFMQ--SYPQPPLFTTPPPLPQDN-SILNYPTPSQTFIPQQ 131

Query: 456 PLGATTYTTPFVQTVPIASTA 518
            L  T+Y+T F    P A +A
Sbjct: 132 TL-KTSYSTSFGSLGPPAPSA 151


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,110,299
Number of Sequences: 27780
Number of extensions: 287030
Number of successful extensions: 1020
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1020
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)