Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0087
         (396 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006680-8|AAK72298.1|  355|Caenorhabditis elegans Serpentine re...    28   2.8  
Z81091-5|CAB03142.1|  768|Caenorhabditis elegans Hypothetical pr...    27   4.9  
Z95559-15|CAB63361.1|  917|Caenorhabditis elegans Hypothetical p...    27   6.4  
AL031635-11|CAA21038.3|  446|Caenorhabditis elegans Hypothetical...    27   6.4  
AL021482-2|CAA16339.1| 1003|Caenorhabditis elegans Hypothetical ...    27   6.4  

>AC006680-8|AAK72298.1|  355|Caenorhabditis elegans Serpentine
           receptor, class t protein6 protein.
          Length = 355

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 238 PVITANIITAGFIFSFYYTMLFL 306
           P++ A   T+G IF F YT+ FL
Sbjct: 36  PILGAYFFTSGVIFIFLYTLCFL 58


>Z81091-5|CAB03142.1|  768|Caenorhabditis elegans Hypothetical
           protein F55H12.1 protein.
          Length = 768

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +2

Query: 35  SPPGVKWLLEPIDIYNVNAPPTLRYKLQGLSIVTTATPP 151
           +P   K  + P  +    APPT+R  +   ++ TT  PP
Sbjct: 3   TPVSTKKTIAPSTMKTTVAPPTMRTTMAPTTMKTTVAPP 41


>Z95559-15|CAB63361.1|  917|Caenorhabditis elegans Hypothetical
           protein Y41E3.11 protein.
          Length = 917

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +3

Query: 159 RNALLLHGRNRQGGGTYPRGLTRGPTTSNYRKYNYCGFH 275
           R+ L++ GR R+GGG Y     RG        Y++ G+H
Sbjct: 600 RSWLVIPGR-RRGGGGYNNHHNRGDRGGGGGNYHHGGYH 637


>AL031635-11|CAA21038.3|  446|Caenorhabditis elegans Hypothetical
           protein Y47D3B.3 protein.
          Length = 446

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 277 FSFYYTMLFLHRGSQS*TFDEYVF 348
           FSF++  +F H   QS +FD+ VF
Sbjct: 83  FSFFFRHIFPHLPQQSTSFDQEVF 106


>AL021482-2|CAA16339.1| 1003|Caenorhabditis elegans Hypothetical
            protein Y39A1B.2 protein.
          Length = 1003

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +2

Query: 47   VKWLLEPIDIYNVNAPPTLRYKLQGLSIVTTATPPF-KPKRITASRQK 187
            +++L  P D+Y +  PP++ Y L  L    T + P   P  +T S ++
Sbjct: 891  IQFLSNP-DLYTMPPPPSVEYSLSTLEFNRTQSRPLGAPPALTGSPKR 937


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,495,035
Number of Sequences: 27780
Number of extensions: 220499
Number of successful extensions: 446
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 446
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 609015246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)