Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0083
         (636 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical pr...    30   1.2  
Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical p...    30   1.2  
AL117203-6|CAB60419.1|  234|Caenorhabditis elegans Hypothetical ...    30   1.2  
Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical pr...    28   6.4  
Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical p...    28   6.4  
Z35597-4|CAA84647.2|  548|Caenorhabditis elegans Hypothetical pr...    27   8.5  

>Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical protein
            F53B7.5a protein.
          Length = 3095

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -1

Query: 615  FNQKYLTLTICPFPNPGCANCWKGRSGAGLFAITPAAKG 499
            F ++Y  L +C FP   C + +  +S  G F I+    G
Sbjct: 2856 FEKEYCNLAVCKFPLASCCSGFTPQSSGGTFCISLGCLG 2894


>Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical
            protein F53B7.5a protein.
          Length = 3095

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -1

Query: 615  FNQKYLTLTICPFPNPGCANCWKGRSGAGLFAITPAAKG 499
            F ++Y  L +C FP   C + +  +S  G F I+    G
Sbjct: 2856 FEKEYCNLAVCKFPLASCCSGFTPQSSGGTFCISLGCLG 2894


>AL117203-6|CAB60419.1|  234|Caenorhabditis elegans Hypothetical
           protein Y48C3A.9 protein.
          Length = 234

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 201 PGVRGLPEPIGIYVNYVTHLETRVLSQFNST 109
           PG  G+P P+G     VT+L+ R +  F+ T
Sbjct: 188 PGAVGMPRPVGPGAPMVTYLKNRKIEDFSKT 218


>Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical protein
            F53B7.5b protein.
          Length = 2892

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -1

Query: 615  FNQKYLTLTICPFPNPGCANCWKGRSGAGLF 523
            F ++Y  L +C FP   C + +  +S  G F
Sbjct: 2856 FEKEYCNLAVCKFPLASCCSGFTPQSSGGTF 2886


>Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical
            protein F53B7.5b protein.
          Length = 2892

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -1

Query: 615  FNQKYLTLTICPFPNPGCANCWKGRSGAGLF 523
            F ++Y  L +C FP   C + +  +S  G F
Sbjct: 2856 FEKEYCNLAVCKFPLASCCSGFTPQSSGGTF 2886


>Z35597-4|CAA84647.2|  548|Caenorhabditis elegans Hypothetical
           protein C36E8.4 protein.
          Length = 548

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 11/58 (18%), Positives = 27/58 (46%)
 Frame = -1

Query: 195 VRGLPEPIGIYVNYVTHLETRVLSQFNSTTTTPAGLDRGWSGLVARMFLFLSLHDDIG 22
           V    E   +  +Y   L+   +     T +  +G+D+GW+ +  +  +  ++H ++G
Sbjct: 71  VTAFEEKAALDFHYSKTLKKISIRLHKLTQSVESGIDKGWTNVAEQFDIHATIHSNLG 128


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,974,197
Number of Sequences: 27780
Number of extensions: 354632
Number of successful extensions: 845
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 845
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)