Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0050
         (726 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF077545-2|AAC26305.3|  356|Caenorhabditis elegans Hypothetical ...    33   0.16 
U64858-6|AAB18283.2|  392|Caenorhabditis elegans Hypothetical pr...    29   3.4  

>AF077545-2|AAC26305.3|  356|Caenorhabditis elegans Hypothetical
           protein H41C03.2 protein.
          Length = 356

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 17/58 (29%), Positives = 25/58 (43%)
 Frame = +3

Query: 333 VDTGTHRHLQRIYATHLEI*VLRSQYNGCPALQTETHYCFTAGWWYLPVQTHIRSYHQ 506
           ++T  H   +  Y +H+ +      Y  C   Q ET YC    WW  PV  H+  + Q
Sbjct: 295 IETAHHNSFEIFYGSHMAV----DNYKICN--QPETEYCLKGSWWKKPV-AHMYLFDQ 345


>U64858-6|AAB18283.2|  392|Caenorhabditis elegans Hypothetical
           protein C16D9.5 protein.
          Length = 392

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +2

Query: 551 YFSSKLESIGSIFPFYKDTGFDSGNIYLAQYFNGNIKRTF 670
           +F+    SIGS++ FY +  F   ++ L +++   IK+ F
Sbjct: 154 HFNEATHSIGSVYKFYHNAKFILYSLGLNKFYTQTIKKQF 193


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,747,016
Number of Sequences: 27780
Number of extensions: 345655
Number of successful extensions: 577
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)