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Last updated: 2019/10/06
 
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0030
         (704 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032623-8|CAA21514.1|  123|Caenorhabditis elegans Hypothetical ...    28   7.5  
AF099913-3|AAC68750.1|  143|Caenorhabditis elegans Hypothetical ...    27   9.9  

>AL032623-8|CAA21514.1|  123|Caenorhabditis elegans Hypothetical
           protein Y43F8B.7 protein.
          Length = 123

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -1

Query: 317 WRRPRSSSEMNCKTHSCA*IFVVN 246
           W+   + S   CKTHSC  IF  N
Sbjct: 49  WKLSGTPSSPTCKTHSCGFIFWTN 72


>AF099913-3|AAC68750.1|  143|Caenorhabditis elegans Hypothetical
           protein C29F9.9 protein.
          Length = 143

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 513 SNWLTPKCLLP*QSYERHTYIIYVKYTNKTNGAIKV 620
           +N+  P+     + Y  HT ++YV Y N  +G +KV
Sbjct: 60  ANYSQPQFYSTIEEYSNHTSVVYVLY-NTCDGVVKV 94


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,027,112
Number of Sequences: 27780
Number of extensions: 309444
Number of successful extensions: 525
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 525
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

The construction of this database has been supported by
Grant-in-Aid for Publication of Scientific Research Results,
JSPS, Japan (1999-2003, 2005-2018).

The EST sequencing was supported by the Genome Analysis Program,National Bioresource Project (NBRP),
Grants-in-Aid for Scientific Research, MEXT,and the Agrigenome Program, NIAS/MAFF.
The maintenance and distribution of the DNA clones are supported by the National Bioresource Project (NBRP).