Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0013
         (573 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70684-7|CAA94601.1|  143|Caenorhabditis elegans Hypothetical pr...    96   2e-20
Z83744-2|CAB06039.1|  430|Caenorhabditis elegans Hypothetical pr...    30   1.0  
Z92838-1|CAB07406.1|  157|Caenorhabditis elegans Hypothetical pr...    30   1.3  
U50308-3|AAW88404.1| 1392|Caenorhabditis elegans Gut granule los...    29   1.8  
AL132898-6|CAC14409.1|  187|Caenorhabditis elegans Hypothetical ...    28   5.4  
AL132898-5|CAC14408.1|  316|Caenorhabditis elegans Hypothetical ...    28   5.4  
AF025467-6|AAB71037.2|   95|Caenorhabditis elegans Hypothetical ...    27   9.5  

>Z70684-7|CAA94601.1|  143|Caenorhabditis elegans Hypothetical
           protein F28D1.7 protein.
          Length = 143

 Score = 95.9 bits (228), Expect = 2e-20
 Identities = 43/52 (82%), Positives = 48/52 (92%)
 Frame = -3

Query: 253 NHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 98
           N +EENDEVLV+GFGR GHAVGDIPGVRFK+VKVAN SL+AL+K KKERPRS
Sbjct: 92  NFVEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVANTSLIALFKGKKERPRS 143



 Score = 82.2 bits (194), Expect = 2e-16
 Identities = 37/42 (88%), Positives = 39/42 (92%)
 Frame = -1

Query: 381 GPPLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGC 256
           G  LEK+GVEAKQPNSAIRKCVRVQLIKNGKK+TAFVP DGC
Sbjct: 49  GIVLEKIGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGC 90


>Z83744-2|CAB06039.1|  430|Caenorhabditis elegans Hypothetical
           protein C06A12.5 protein.
          Length = 430

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +1

Query: 238 FLRCGLATVTGDECGHFLSVLNELY 312
           +L  GL T TG+ CG ++ +LNE+Y
Sbjct: 400 YLSNGLKTGTGELCGTYMRLLNEVY 424


>Z92838-1|CAB07406.1|  157|Caenorhabditis elegans Hypothetical
           protein T03D8.2 protein.
          Length = 157

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = -1

Query: 381 GPPLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDG 259
           G  L+ V    K+PNS  RKC  V+L   G +V A++P  G
Sbjct: 78  GIVLKTVIRHPKKPNSGNRKCAIVRL-STGAEVCAYIPNVG 117


>U50308-3|AAW88404.1| 1392|Caenorhabditis elegans Gut granule loss
            protein 4 protein.
          Length = 1392

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -2

Query: 350  LSSPTLPSANASVYSSLRTERK*PHSSPVTVAKP 249
            +S PT+PS++  V S +R   +  H+ P  V  P
Sbjct: 1337 VSCPTIPSSSLEVSSKIRVYAQCAHAEPAAVGSP 1370


>AL132898-6|CAC14409.1|  187|Caenorhabditis elegans Hypothetical
           protein Y59A8B.9 protein.
          Length = 187

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 162 TLKRTPGMSPTA*PLRPNPATSTSS 236
           T  RTP  +P A P RP P+ S+++
Sbjct: 38  TTMRTPAATPAAPPTRPTPSRSSAA 62


>AL132898-5|CAC14408.1|  316|Caenorhabditis elegans Hypothetical
           protein Y59A8B.7 protein.
          Length = 316

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 162 TLKRTPGMSPTA*PLRPNPATSTSS 236
           T  RTP  +P A P RP P+ S+++
Sbjct: 167 TTMRTPAATPAAPPTRPTPSRSSAA 191


>AF025467-6|AAB71037.2|   95|Caenorhabditis elegans Hypothetical
           protein R148.2 protein.
          Length = 95

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
 Frame = -3

Query: 259 LPNHIEENDEVLVAGFGRKGHAVGDIPGVRF----KVVKVANVSLLALYKEKKERPR 101
           + + +E+N   +++  G  G  V D  GVR     K+  +ANV  L +   K   P+
Sbjct: 1   MESKLEQNVTAMMSSTGASGITVADSEGVRLHSAGKITDMANVGSLMIADAKNMFPK 57


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,044,522
Number of Sequences: 27780
Number of extensions: 306620
Number of successful extensions: 746
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 746
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)