Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0113
(665 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 378 e-105
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 378 e-105
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 244 3e-83
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 304 4e-83
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 219 2e-57
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 219 2e-57
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 210 5e-55
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 138 2e-33
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 94 9e-20
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 94 9e-20
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 94 9e-20
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 92 4e-19
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 92 4e-19
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 59 2e-09
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 56 3e-08
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 56 3e-08
Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical p... 44 8e-06
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 45 6e-05
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 44 7e-05
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 44 1e-04
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 40 0.001
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 38 0.005
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 38 0.005
Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical pr... 38 0.005
AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical ... 37 0.011
L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding pro... 34 0.079
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 34 0.10
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 34 0.10
AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical... 33 0.14
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr... 32 0.42
Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical p... 29 2.2
Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical p... 29 2.2
AL008869-2|CAC42315.1| 810|Caenorhabditis elegans Hypothetical ... 29 2.2
AL008869-1|CAA15516.1| 808|Caenorhabditis elegans Hypothetical ... 29 2.2
AB032749-1|BAA92158.1| 810|Caenorhabditis elegans EAT-20B protein. 29 2.2
AB032748-1|BAA92157.1| 808|Caenorhabditis elegans EAT-20A protein. 29 2.2
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 29 3.9
AF040643-5|AAT81201.1| 299|Caenorhabditis elegans Hypothetical ... 29 3.9
Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical pr... 28 6.8
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 378 bits (931), Expect = e-105
Identities = 178/199 (89%), Positives = 186/199 (93%)
Frame = +3
Query: 69 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 248
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 249 DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSHADCAVLIVAAGT 428
DKLKAERERGITIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTS ADCAVL+VA GT
Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGT 120
Query: 429 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKK 608
GEFEAGISKNGQTREHALLA TLGVKQLIV NKMDSTEPP+SE RF EI EVS +IKK
Sbjct: 121 GEFEAGISKNGQTREHALLAQTLGVKQLIVACNKMDSTEPPFSEARFTEITNEVSGFIKK 180
Query: 609 IGYNPAAVAFVPISGWHGN 665
IGYNP AV FVPISG++G+
Sbjct: 181 IGYNPKAVPFVPISGFNGD 199
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 378 bits (931), Expect = e-105
Identities = 178/199 (89%), Positives = 186/199 (93%)
Frame = +3
Query: 69 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 248
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 249 DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSHADCAVLIVAAGT 428
DKLKAERERGITIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTS ADCAVL+VA GT
Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGT 120
Query: 429 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKK 608
GEFEAGISKNGQTREHALLA TLGVKQLIV NKMDSTEPP+SE RF EI EVS +IKK
Sbjct: 121 GEFEAGISKNGQTREHALLAQTLGVKQLIVACNKMDSTEPPFSEARFTEITNEVSGFIKK 180
Query: 609 IGYNPAAVAFVPISGWHGN 665
IGYNP AV FVPISG++G+
Sbjct: 181 IGYNPKAVPFVPISGFNGD 199
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 244 bits (597), Expect(2) = 3e-83
Identities = 112/117 (95%), Positives = 115/117 (98%)
Frame = +3
Query: 69 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 248
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 249 DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSHADCAVLIVA 419
DKLKAERERGITIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTS ADCAVL+VA
Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVA 117
Score = 82.6 bits (195), Expect(2) = 3e-83
Identities = 37/52 (71%), Positives = 43/52 (82%)
Frame = +3
Query: 510 LIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGN 665
L+V NKMDSTEPP+SE RF EI EVS +IKKIGYNP AV FVPISG++G+
Sbjct: 114 LVVACNKMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVPISGFNGD 165
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 304 bits (746), Expect = 4e-83
Identities = 147/172 (85%), Positives = 154/172 (89%)
Frame = +3
Query: 69 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 248
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 249 DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSHADCAVLIVAAGT 428
DKLKAERERGITIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTS ADCAVL+VA GT
Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGT 120
Query: 429 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKK 584
GEFEAGISKNGQTREHALLA TLGVKQL V+ T P S R + I++
Sbjct: 121 GEFEAGISKNGQTREHALLAQTLGVKQL---VSLRSPTRSPDSSRRSDTIQR 169
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 219 bits (534), Expect = 2e-57
Identities = 105/196 (53%), Positives = 142/196 (72%), Gaps = 1/196 (0%)
Frame = +3
Query: 78 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 257
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD+
Sbjct: 167 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 226
Query: 258 KAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSHADCAVLIVAAGTGEF 437
+ ERERG+T+DI FETS + ++DAPGH+DFI NMITGTS AD A+L+V A TGEF
Sbjct: 227 EEERERGVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEF 286
Query: 438 EAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYI-KKIG 614
E G GQT+EHALL +LGV QLIV VNK+D+ + +S+ RF+EIK +S ++ ++ G
Sbjct: 287 ETGFENGGQTKEHALLLRSLGVTQLIVAVNKLDTVD--WSQDRFDEIKNNLSVFLTRQAG 344
Query: 615 YNPAAVAFVPISGWHG 662
++ FVP+SG+ G
Sbjct: 345 FSKP--KFVPVSGFTG 358
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 219 bits (534), Expect = 2e-57
Identities = 105/196 (53%), Positives = 142/196 (72%), Gaps = 1/196 (0%)
Frame = +3
Query: 78 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 257
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD+
Sbjct: 185 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 244
Query: 258 KAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSHADCAVLIVAAGTGEF 437
+ ERERG+T+DI FETS + ++DAPGH+DFI NMITGTS AD A+L+V A TGEF
Sbjct: 245 EEERERGVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEF 304
Query: 438 EAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYI-KKIG 614
E G GQT+EHALL +LGV QLIV VNK+D+ + +S+ RF+EIK +S ++ ++ G
Sbjct: 305 ETGFENGGQTKEHALLLRSLGVTQLIVAVNKLDTVD--WSQDRFDEIKNNLSVFLTRQAG 362
Query: 615 YNPAAVAFVPISGWHG 662
++ FVP+SG+ G
Sbjct: 363 FSKP--KFVPVSGFTG 376
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 210 bits (514), Expect = 5e-55
Identities = 94/198 (47%), Positives = 138/198 (69%), Gaps = 1/198 (0%)
Frame = +3
Query: 72 GKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLD 251
G K HIN+V +GHVD+GKST G L++ G +DKRT+EK+E+EA+E G+ S+ +W +D
Sbjct: 104 GTHKEHINMVFVGHVDAGKSTIGGQLMFLTGMVDKRTLEKYEREAKEKGRESWYLSWCMD 163
Query: 252 KLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSHADCAVLIVAAGTG 431
ERE+G T+++ FET K + TI+DAPGH+ F+ NMI G + AD AVL+++A G
Sbjct: 164 TNDEEREKGKTVEVGRAYFETEKRHFTILDAPGHKSFVPNMIVGANQADLAVLVISARRG 223
Query: 432 EFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKI 611
EFE G + GQTREH++L T GVK L++ VNKMD + E RF+EI+ +++ +++K+
Sbjct: 224 EFETGFDRGGQTREHSMLVKTAGVKHLVILVNKMDDPTVKWEEERFKEIEGKLTPFLRKL 283
Query: 612 GYNPAA-VAFVPISGWHG 662
G+NP + +VP SG G
Sbjct: 284 GFNPKTDITYVPCSGLTG 301
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 138 bits (335), Expect = 2e-33
Identities = 63/67 (94%), Positives = 64/67 (95%)
Frame = +3
Query: 69 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 248
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 249 DKLKAER 269
DKLK +
Sbjct: 61 DKLKVTK 67
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 93.9 bits (223), Expect = 9e-20
Identities = 64/183 (34%), Positives = 95/183 (51%), Gaps = 2/183 (1%)
Frame = +3
Query: 75 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 254
++K H+N+ IGHVD GK+T T + K+E +D
Sbjct: 45 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYED---------------IDN 89
Query: 255 LKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSHADCAVLIVAAGTGE 434
E+ RGITI+ ++ET+K + ID PGH D+IKNMITG + + A+L+VAA G
Sbjct: 90 APEEKARGITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGP 149
Query: 435 FEAGISKNGQTREHALLAFTLGV--KQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKK 608
QTREH LLA +GV ++V +NK+D E P +E R E ++ ++ + +
Sbjct: 150 MP-------QTREHLLLARQVGVPLDNIVVFMNKVD--EVPDAETR-ELVEMDIREQLNE 199
Query: 609 IGY 617
GY
Sbjct: 200 FGY 202
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 93.9 bits (223), Expect = 9e-20
Identities = 64/183 (34%), Positives = 95/183 (51%), Gaps = 2/183 (1%)
Frame = +3
Query: 75 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 254
++K H+N+ IGHVD GK+T T + K+E +D
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYED---------------IDN 90
Query: 255 LKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSHADCAVLIVAAGTGE 434
E+ RGITI+ ++ET+K + ID PGH D+IKNMITG + + A+L+VAA G
Sbjct: 91 APEEKARGITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGP 150
Query: 435 FEAGISKNGQTREHALLAFTLGV--KQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKK 608
QTREH LLA +GV ++V +NK+D E P +E R E ++ ++ + +
Sbjct: 151 MP-------QTREHLLLARQVGVPLDNIVVFMNKVD--EVPDAETR-ELVEMDIREQLNE 200
Query: 609 IGY 617
GY
Sbjct: 201 FGY 203
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 93.9 bits (223), Expect = 9e-20
Identities = 64/183 (34%), Positives = 95/183 (51%), Gaps = 2/183 (1%)
Frame = +3
Query: 75 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 254
++K H+N+ IGHVD GK+T T + K+E +D
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYED---------------IDN 90
Query: 255 LKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSHADCAVLIVAAGTGE 434
E+ RGITI+ ++ET+K + ID PGH D+IKNMITG + + A+L+VAA G
Sbjct: 91 APEEKARGITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGP 150
Query: 435 FEAGISKNGQTREHALLAFTLGV--KQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKK 608
QTREH LLA +GV ++V +NK+D E P +E R E ++ ++ + +
Sbjct: 151 MP-------QTREHLLLARQVGVPLDNIVVFMNKVD--EVPDAETR-ELVEMDIREQLNE 200
Query: 609 IGY 617
GY
Sbjct: 201 FGY 203
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 91.9 bits (218), Expect = 4e-19
Identities = 65/189 (34%), Positives = 96/189 (50%), Gaps = 2/189 (1%)
Frame = +3
Query: 81 KTHINIVVIGHVDSGKSTTTGHL--IYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 254
K ++N+ IGH+D GK+T T + + G K KF++ +DK
Sbjct: 43 KINVNVGTIGHIDHGKTTLTSAITRVQAKKGFAKHI--KFDE---------------IDK 85
Query: 255 LKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSHADCAVLIVAAGTGE 434
K E++RGITI++A +E+ + D PGH DFIKNMI GTS D AVL++AA G
Sbjct: 86 GKEEKKRGITINVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAATDGV 145
Query: 435 FEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIG 614
E QT+EH +LA +GVK + + +NK D E E + ++ E + G
Sbjct: 146 ME-------QTKEHLILAKQVGVKNMAIFINKADLVE----EDDLDLVEMEARELLSLHG 194
Query: 615 YNPAAVAFV 641
+N A +
Sbjct: 195 FNGDATPVI 203
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 91.9 bits (218), Expect = 4e-19
Identities = 65/189 (34%), Positives = 96/189 (50%), Gaps = 2/189 (1%)
Frame = +3
Query: 81 KTHINIVVIGHVDSGKSTTTGHL--IYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 254
K ++N+ IGH+D GK+T T + + G K KF++ +DK
Sbjct: 43 KINVNVGTIGHIDHGKTTLTSAITRVQAKKGFAKHI--KFDE---------------IDK 85
Query: 255 LKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSHADCAVLIVAAGTGE 434
K E++RGITI++A +E+ + D PGH DFIKNMI GTS D AVL++AA G
Sbjct: 86 GKEEKKRGITINVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAATDGV 145
Query: 435 FEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIG 614
E QT+EH +LA +GVK + + +NK D E E + ++ E + G
Sbjct: 146 ME-------QTKEHLILAKQVGVKNMAIFINKADLVE----EDDLDLVEMEARELLSLHG 194
Query: 615 YNPAAVAFV 641
+N A +
Sbjct: 195 FNGDATPVI 203
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 59.3 bits (137), Expect = 2e-09
Identities = 47/148 (31%), Positives = 67/148 (45%)
Frame = +3
Query: 93 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 272
N ++ HVD GKST L+ CG + +K+ +LDKL+ ERE
Sbjct: 44 NFGIVAHVDHGKSTLADRLLEMCGAVPPG-----QKQ-------------MLDKLQVERE 85
Query: 273 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSHADCAVLIVAAGTGEFEAGIS 452
RGIT+ Y + +ID PGH DF + + D +L+VAA G
Sbjct: 86 RGITVKAQTAALRHRGYLLNLIDTPGHVDFSAEVSRSLAVCDGILLLVAANQG------- 138
Query: 453 KNGQTREHALLAFTLGVKQLIVGVNKMD 536
QT + LAF + Q+I +NK+D
Sbjct: 139 VQAQTIANFWLAFEKNI-QIIPVINKID 165
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 55.6 bits (128), Expect = 3e-08
Identities = 47/148 (31%), Positives = 65/148 (43%)
Frame = +3
Query: 93 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 272
NI + H+DSGK+T T ++Y G ID E+ +G +D + ER+
Sbjct: 46 NIGISAHIDSGKTTVTERILYYAGRIDSM---------HEV-RGKDDVGATMDFMDLERQ 95
Query: 273 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSHADCAVLIVAAGTGEFEAGIS 452
RGITI A + + IID PGH DF + D AVL++ G G G+
Sbjct: 96 RGITIQSAATYVDWHGTNINIIDTPGHVDFTVEVERALRVLDGAVLVL-CGVG----GVQ 150
Query: 453 KNGQTREHALLAFTLGVKQLIVGVNKMD 536
T L + + I VNKMD
Sbjct: 151 SQTFTVNRQLARYNV---PFICFVNKMD 175
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 55.6 bits (128), Expect = 3e-08
Identities = 39/113 (34%), Positives = 53/113 (46%)
Frame = +3
Query: 93 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 272
NI VI HVD+GK+T T L+Y G I A + KG+ V D L ERE
Sbjct: 27 NIGVIAHVDAGKTTVTERLLYLAGAIHV---------AGHVDKGNT----VTDFLDIERE 73
Query: 273 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSHADCAVLIVAAGTG 431
RGIT+ A + + + +ID PGH DF + D V+++ G
Sbjct: 74 RGITVQSAAVNLDWKGHRINLIDTPGHVDFRVEVERCVRVLDGIVVVIDGSAG 126
>Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical
protein F46B6.6a protein.
Length = 702
Score = 44.0 bits (99), Expect(2) = 8e-06
Identities = 38/108 (35%), Positives = 48/108 (44%), Gaps = 1/108 (0%)
Frame = +3
Query: 216 GKGSFKYAWVLDKLKAERERGITIDIALWKFETSK-YYVTIIDAPGHRDFIKNMITGTSH 392
GK + A ++ A GIT I + E +K VT +D PGH F G
Sbjct: 168 GKTTLLDAMRNSQIAAGEFGGITQHIGAFSVELTKGRRVTFLDTPGHAAFASMRARGAKG 227
Query: 393 ADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMD 536
AD VL+VAA G E QT + A V QL+V VNK+D
Sbjct: 228 ADIVVLVVAADDGVKE-------QTAQSIKFAKDANV-QLVVAVNKID 267
Score = 23.0 bits (47), Expect(2) = 8e-06
Identities = 7/13 (53%), Positives = 11/13 (84%)
Frame = +3
Query: 96 IVVIGHVDSGKST 134
+ ++GHVD GK+T
Sbjct: 159 VTIMGHVDHGKTT 171
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 44.8 bits (101), Expect = 6e-05
Identities = 38/134 (28%), Positives = 64/134 (47%), Gaps = 13/134 (9%)
Frame = +3
Query: 69 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGI--DKRTIEKF---EKEAQE----MGK 221
M +++ N+ VI HVD GKST T L+ K G I K +F K+ QE +
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGSKAGETRFTDTRKDEQERCITIKS 72
Query: 222 GSFKYAWVLDKLKAERERG----ITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTS 389
+ + L+K E +G T+++ K + + + + +ID+PGH DF +
Sbjct: 73 TAISLFFELEKKDLEFVKGENQFETVEVDGKKEKYNGFLINLIDSPGHVDFSSEVTAALG 132
Query: 390 HADCAVLIVAAGTG 431
D A+++V +G
Sbjct: 133 VTDGALVVVDCVSG 146
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 44.4 bits (100), Expect = 7e-05
Identities = 38/134 (28%), Positives = 64/134 (47%), Gaps = 13/134 (9%)
Frame = +3
Query: 69 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGI--DKRTIEKF---EKEAQE----MGK 221
M +++ N+ VI HVD GKST T L+ K G I K +F K+ QE +
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGSKAGETRFTDTRKDEQERCITIKS 72
Query: 222 GSFKYAWVLDKLKAERERG----ITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTS 389
+ + L+K E +G T+++ K + + + + +ID+PGH DF +
Sbjct: 73 TAISLFFELEKKDLEFVKGENQFETVEVDGKKEKYNGFLINLIDSPGHVDFSSEVTAALR 132
Query: 390 HADCAVLIVAAGTG 431
D A+++V +G
Sbjct: 133 VTDGALVVVDCVSG 146
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 43.6 bits (98), Expect = 1e-04
Identities = 47/176 (26%), Positives = 77/176 (43%), Gaps = 1/176 (0%)
Frame = +3
Query: 90 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAER 269
+N+ ++GHVDSGK+T T + E+G S A
Sbjct: 14 LNLGILGHVDSGKTTLT-------------------RRIAELGSTSAFDAHATSTTTDGI 54
Query: 270 ERGITIDIALWKFET-SKYYVTIIDAPGHRDFIKNMITGTSHADCAVLIVAAGTGEFEAG 446
R T+D+ + S + +ID PGH I+ ++ ++ D A++I+ + AG
Sbjct: 55 RRN-TLDLGFSTMTSLSGRRLALIDCPGHSGLIRAVLAASTVFDMAIVII-----DVVAG 108
Query: 447 ISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIG 614
I QT EH LLA ++I+ +NK D E + + E K+V +K +G
Sbjct: 109 IQP--QTAEHLLLASKFCPNRVIIVLNKCDLAE----KSKISESAKKVRKGLKSMG 158
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 40.3 bits (90), Expect = 0.001
Identities = 53/189 (28%), Positives = 77/189 (40%), Gaps = 11/189 (5%)
Frame = +3
Query: 63 PKMGKEKTHINIVVIGHVDSGKSTTTGHLIYKC---GGIDKRTIEKFEKEAQEMGKGSFK 233
P K+ + V+G+VD+GKST G L + G RT K E G+ S
Sbjct: 132 PPTEKDFIEARVAVVGNVDAGKSTLLGVLTHSALDDGRGAARTKLFRHKHEFESGRTSSV 191
Query: 234 YAWVL------DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITG-TSH 392
+L + + +D + +K VT ID GH ++K I G T H
Sbjct: 192 GNDILGFDVHGNIVNKPDPHNHNLDWVQIGSDCAK-LVTFIDLAGHEKYLKTTIFGMTGH 250
Query: 393 -ADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRF 569
D +L++ A G G T+EH LA +L V +V V K+D E
Sbjct: 251 MPDYTMLMIGANMGII-------GTTKEHLSLALSLHVPVYLV-VTKIDMCPANILEETM 302
Query: 570 EEIKKEVSS 596
+ I + V S
Sbjct: 303 KNITRLVRS 311
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 38.3 bits (85), Expect = 0.005
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 1/115 (0%)
Frame = +3
Query: 75 KEKTHI-NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLD 251
K HI N+ ++ HVD GK++ L+ I R G +Y +D
Sbjct: 15 KPAEHIRNVCLVAHVDHGKTSFADSLVSANAVISSRMA------------GKLRY---MD 59
Query: 252 KLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSHADCAVLIV 416
+ E+ RGIT+ + + +ID+PGH DF + + +D A+L++
Sbjct: 60 SREDEQTRGITMKSSGISLLCEPLLINLIDSPGHVDFSGEVTSALILSDIALLLI 114
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical
protein K10C3.5a protein.
Length = 894
Score = 38.3 bits (85), Expect = 0.005
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 1/115 (0%)
Frame = +3
Query: 75 KEKTHI-NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLD 251
K HI N+ ++ HVD GK++ L+ I R G +Y +D
Sbjct: 15 KPAEHIRNVCLVAHVDHGKTSFADSLVSANAVISSRMA------------GKLRY---MD 59
Query: 252 KLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSHADCAVLIV 416
+ E+ RGIT+ + + +ID+PGH DF + + +D A+L++
Sbjct: 60 SREDEQTRGITMKSSGISLLCEPLLINLIDSPGHVDFSGEVTSALILSDIALLLI 114
>Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical
protein T04H1.2 protein.
Length = 588
Score = 38.3 bits (85), Expect = 0.005
Identities = 55/185 (29%), Positives = 80/185 (43%), Gaps = 10/185 (5%)
Frame = +3
Query: 90 INIVVIGHVDSGKSTTTGHLIYKC--GGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKA 263
+ + V+G D GKST G L C G K I F + E+ G K + V + +
Sbjct: 169 VRLAVVGGCDVGKSTLCGVLTQGCLDDGNGKARIGIF-RFPHEVRTG--KTSSVCNDVIG 225
Query: 264 ERERGITIDIALWKF----ETSKYYVTIIDAPGHRDFIKNMITG----TSHADCAVLIVA 419
RG ++ A E S VT+ID G + K I G T H C L+VA
Sbjct: 226 FDNRGKLVNYAQNSLEEMVEKSSKLVTLIDLAGDAKYQKTTIHGLTGYTPHFAC--LVVA 283
Query: 420 AGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSY 599
A + GI+ TREH L L + ++ + KMD + ++I K+VS+
Sbjct: 284 A-----DRGIT--WATREHLGLIAALNIPMFVL-ITKMDLVD----RQGLKKIIKDVSNL 331
Query: 600 IKKIG 614
+ K G
Sbjct: 332 VAKAG 336
>AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical
protein Y39G10AR.8 protein.
Length = 469
Score = 37.1 bits (82), Expect = 0.011
Identities = 22/85 (25%), Positives = 38/85 (44%)
Frame = +3
Query: 324 YVTIIDAPGHRDFIKNMITGTSHADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 503
+V+ +D PGH + M+ G + D A L+VA QT EH + +
Sbjct: 128 HVSFVDCPGHDILMATMLNGAAVMDAAFLLVAGNEP------CPQPQTSEHLAAVEIMQL 181
Query: 504 KQLIVGVNKMDSTEPPYSEPRFEEI 578
L++ NK+D + + +E+I
Sbjct: 182 NHLMILQNKVDIIKESQARENYEQI 206
>L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding
protein protein.
Length = 593
Score = 34.3 bits (75), Expect = 0.079
Identities = 54/199 (27%), Positives = 78/199 (39%), Gaps = 9/199 (4%)
Frame = +3
Query: 63 PKMGKEKTHINIVVIGHVDSGKSTTTGHLIYKC---GGIDKRTIEKFEKEAQEMGKGSFK 233
P K+ + V+G+VD+GKST G L + G RT K E G+ S
Sbjct: 132 PPTEKDFIEARVAVVGNVDAGKSTLLGVLTHSALDDGRGAARTKLFRHKHEFESGRTSSV 191
Query: 234 YAWVL------DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSHA 395
+L + + +D + +K VT ID GH ++K I G H
Sbjct: 192 GNDILGFDVHGNIVNKPDPHNHNLDWVQIGSDCAK-LVTFIDLAGHEIYLKTTIFG-MHR 249
Query: 396 DCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEE 575
A G A + G T+EH LA +L V +V V K+D P Y EE
Sbjct: 250 PYARNYTMLMIG---ANMGIIGTTKEHLSLALSLHVPVYLV-VTKIDMC-PAYI---LEE 301
Query: 576 IKKEVSSYIKKIGYNPAAV 632
K ++ ++ P V
Sbjct: 302 TMKNITRLVRSAKKLPILV 320
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 33.9 bits (74), Expect = 0.10
Identities = 28/113 (24%), Positives = 47/113 (41%)
Frame = +3
Query: 93 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 272
N+ + GH+ GK+T L+ ++T +F + E F ++K +
Sbjct: 134 NVAIAGHLHHGKTTFLDCLM-------EQTHPEFYRA--EDADARFTDILFIEKQRGCSI 184
Query: 273 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSHADCAVLIVAAGTG 431
+ + I + Y + IID PGH +F M AD V++V A G
Sbjct: 185 KSQPVSIVAQDSRSKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEG 237
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 33.9 bits (74), Expect = 0.10
Identities = 28/113 (24%), Positives = 47/113 (41%)
Frame = +3
Query: 93 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 272
N+ + GH+ GK+T L+ ++T +F + E F ++K +
Sbjct: 9 NVAIAGHLHHGKTTFLDCLM-------EQTHPEFYRA--EDADARFTDILFIEKQRGCSI 59
Query: 273 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSHADCAVLIVAAGTG 431
+ + I + Y + IID PGH +F M AD V++V A G
Sbjct: 60 KSQPVSIVAQDSRSKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEG 112
>AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical
protein Y54G2A.28 protein.
Length = 366
Score = 33.5 bits (73), Expect = 0.14
Identities = 18/43 (41%), Positives = 24/43 (55%)
Frame = -2
Query: 529 LFTPTMSCLTPRVKASKACSRV*PFLEIPASNSPVPAATMSTA 401
LF PT+SC+ + AS S P + PA N VP AT+S +
Sbjct: 13 LFDPTLSCMATQNSASATLSCANPTVAAPA-NDDVPEATLSVS 54
>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
translation initiationfactor eIF5B protein.
Length = 1074
Score = 31.9 bits (69), Expect = 0.42
Identities = 25/78 (32%), Positives = 35/78 (44%)
Frame = +3
Query: 333 IIDAPGHRDFIKNMITGTSHADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQL 512
IID PGH F G+S D A+L+V + G+ QT E +L G
Sbjct: 553 IIDTPGHESFSNLRTRGSSLCDFAILVV-----DIMHGLEP--QTIE-SLKLLIKGKTPF 604
Query: 513 IVGVNKMDSTEPPYSEPR 566
++ +NK+D S PR
Sbjct: 605 VIALNKIDRLYEYESNPR 622
>Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical
protein F54D5.5b protein.
Length = 492
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 171 DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 272
+KR ++ EKE + F Y LDK+K ER+
Sbjct: 272 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERD 305
>Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical
protein F54D5.5a protein.
Length = 427
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 171 DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 272
+KR ++ EKE + F Y LDK+K ER+
Sbjct: 207 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERD 240
>AL008869-2|CAC42315.1| 810|Caenorhabditis elegans Hypothetical
protein H30A04.1b protein.
Length = 810
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +1
Query: 592 PHTSRRLATTQLLSLSCPFLD 654
PH SR T L+ SCPFLD
Sbjct: 158 PHLSRNSFTANALNCSCPFLD 178
>AL008869-1|CAA15516.1| 808|Caenorhabditis elegans Hypothetical
protein H30A04.1a protein.
Length = 808
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +1
Query: 592 PHTSRRLATTQLLSLSCPFLD 654
PH SR T L+ SCPFLD
Sbjct: 158 PHLSRNSFTANALNCSCPFLD 178
>AB032749-1|BAA92158.1| 810|Caenorhabditis elegans EAT-20B protein.
Length = 810
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +1
Query: 592 PHTSRRLATTQLLSLSCPFLD 654
PH SR T L+ SCPFLD
Sbjct: 158 PHLSRNSFTANALNCSCPFLD 178
>AB032748-1|BAA92157.1| 808|Caenorhabditis elegans EAT-20A protein.
Length = 808
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +1
Query: 592 PHTSRRLATTQLLSLSCPFLD 654
PH SR T L+ SCPFLD
Sbjct: 158 PHLSRNSFTANALNCSCPFLD 178
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 28.7 bits (61), Expect = 3.9
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +3
Query: 90 INIVVIGHVDSGKSTTT 140
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>AF040643-5|AAT81201.1| 299|Caenorhabditis elegans Hypothetical
protein F14D2.15 protein.
Length = 299
Score = 28.7 bits (61), Expect = 3.9
Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 7/100 (7%)
Frame = -1
Query: 512 ELFDTEGESEQGMLTGLTVLRDTSFEF-----TGTGSYDEHSAISMRGSCDH--VLDEIS 354
E + +E E G+ L V RD F + +GTGS + H ++R DH + +
Sbjct: 24 EHYTSEEEDHFGIKWWLRVTRDDQFLYVDLGKSGTGSTNFHGNFNVRVESDHGVISENFK 83
Query: 353 VSRSINDGNIVLASFELPESNIDCDTTLTLSL*FVQYPSI 234
S S +D E+P ++ C++ +L + +Y SI
Sbjct: 84 FSGSKSDA-------EIPSTSNRCESFKWSNLDYSKYLSI 116
>Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical
protein D1081.4 protein.
Length = 381
Score = 27.9 bits (59), Expect = 6.8
Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = +3
Query: 327 VTIIDAPGHRDFI--KNMITGTSHADCAVLIVAA 422
V IID+ G RDFI KN+ GT AD +++ AA
Sbjct: 73 VQIIDSSGSRDFIGMKNLYIGT--ADAFLVVFAA 104
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,691,009
Number of Sequences: 27780
Number of extensions: 326251
Number of successful extensions: 994
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 977
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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