Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0109
         (602 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z27080-1|CAA81600.1|  257|Caenorhabditis elegans Hypothetical pr...   254   4e-68
Z30317-1|CAA82967.1|  213|Caenorhabditis elegans Hypothetical pr...    30   1.5  
AC092690-2|AAK73855.2|  745|Caenorhabditis elegans Hypothetical ...    29   2.6  
U23523-11|AAP68942.2|  324|Caenorhabditis elegans Troponin t pro...    29   3.4  
U23523-10|AAP68941.1|  428|Caenorhabditis elegans Troponin t pro...    29   3.4  
Z83129-2|CAB63327.1|  318|Caenorhabditis elegans Hypothetical pr...    28   5.9  

>Z27080-1|CAA81600.1|  257|Caenorhabditis elegans Hypothetical
           protein F55H2.2 protein.
          Length = 257

 Score =  254 bits (622), Expect = 4e-68
 Identities = 122/190 (64%), Positives = 147/190 (77%)
 Frame = +1

Query: 31  GKDRLAIFPSRGAQMLIKGRLAGAVKGHGLLKKKADALQVRFRMILSKIIETKTLMGEVM 210
           GKDR+A+FPSR AQ L+K RL GA KGH LLKKKADAL +RFR IL KI+E K LMGEVM
Sbjct: 5   GKDRIAVFPSRMAQTLMKTRLKGAQKGHSLLKKKADALNLRFRDILRKIVENKVLMGEVM 64

Query: 211 KEAAFSLAEAKFTTGDFNQVVLQNVTKAQIKIXSKKDNVAGVTLPIFESYQDGSDTYEXX 390
           KEAAFSLAEAKFT GDF+  V+QNV++AQ ++  KK+NV GV LP+F++YQDG D Y+  
Sbjct: 65  KEAAFSLAEAKFTAGDFSHTVIQNVSQAQYRVRMKKENVVGVFLPVFDAYQDGPDAYDLT 124

Query: 391 XXXXXXXXXXXXXXNFQSAVKLLVELASLQTSFVTLDEVIKITNRRVNAIEHVIIPRLER 570
                         N+  A++LLVELA+LQT F+TLDE IK+TNRRVNAIEHVIIPR+E 
Sbjct: 125 GLGKGGANIARLKKNYNKAIELLVELATLQTCFITLDEAIKVTNRRVNAIEHVIIPRIEN 184

Query: 571 TLAYIISELD 600
           TL YI++ELD
Sbjct: 185 TLTYIVTELD 194


>Z30317-1|CAA82967.1|  213|Caenorhabditis elegans Hypothetical
           protein T16G12.4 protein.
          Length = 213

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = -1

Query: 554 MITCSMALTRLFVILITSSRVTNEVCSEANSTKSFTALWKFFFSF 420
           +ITCS  +  +F++++    +T+   SEA    ++   WK F  F
Sbjct: 103 IITCSQLILYVFLLIVIPIFLTDYFASEAQRYMNYPHEWKVFKDF 147


>AC092690-2|AAK73855.2|  745|Caenorhabditis elegans Hypothetical
           protein BE0003N10.1 protein.
          Length = 745

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -3

Query: 255 SSCELSFSQRESSFFHHFTHKGFSLNDF 172
           S  +L  SQR+ SF  H+   GF++N+F
Sbjct: 386 SVAQLLGSQRKKSFMLHYEFPGFAINEF 413


>U23523-11|AAP68942.2|  324|Caenorhabditis elegans Troponin t
           protein 2, isoform b protein.
          Length = 324

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +1

Query: 58  SRGAQMLIKGRLAGAVKGHGLLKKKADALQVRFRMILSKIIETKTLMGEVMKE 216
           ++G Q    G LA   K  GL K++ +  +  F  ++ K  +  TLM   +KE
Sbjct: 87  NKGDQAANFGNLAQGAKAEGLTKEQQEDAKRAFLNVVCKAQDVSTLMPNDLKE 139


>U23523-10|AAP68941.1|  428|Caenorhabditis elegans Troponin t
           protein 2, isoform a protein.
          Length = 428

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +1

Query: 58  SRGAQMLIKGRLAGAVKGHGLLKKKADALQVRFRMILSKIIETKTLMGEVMKE 216
           ++G Q    G LA   K  GL K++ +  +  F  ++ K  +  TLM   +KE
Sbjct: 191 NKGDQAANFGNLAQGAKAEGLTKEQQEDAKRAFLNVVCKAQDVSTLMPNDLKE 243


>Z83129-2|CAB63327.1|  318|Caenorhabditis elegans Hypothetical
           protein W06G6.3 protein.
          Length = 318

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 16/52 (30%), Positives = 30/52 (57%)
 Frame = -1

Query: 314 LDXILI*ALVTFCSTTWLKSPVVNLASAKEKAASFITSPIRVLVSMILLKII 159
           L  +++ ++VTFC + W++  +V     KEK A    S   +L++M L+K +
Sbjct: 181 LAFLMVTSVVTFCGSLWIRHFLVRF--LKEKTARL--SKTTILLNMQLVKAL 228


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,709,298
Number of Sequences: 27780
Number of extensions: 241679
Number of successful extensions: 661
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)