Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0098
(671 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L18963-1|AAC14457.1| 152|Caenorhabditis elegans unc-60 protein. 110 8e-25
AF024494-2|AAL02463.1| 152|Caenorhabditis elegans Uncoordinated... 110 8e-25
L18963-2|AAC14458.1| 165|Caenorhabditis elegans unc-60 protein. 82 3e-16
AF024494-3|AAL02461.1| 165|Caenorhabditis elegans Uncoordinated... 82 3e-16
AF024494-1|AAL02462.2| 212|Caenorhabditis elegans Uncoordinated... 80 2e-15
Z48717-10|CAA88612.2| 423|Caenorhabditis elegans Hypothetical p... 29 2.3
Z48584-9|CAA88478.2| 423|Caenorhabditis elegans Hypothetical pr... 29 2.3
Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical pr... 29 3.0
AC025723-3|AAK29935.1| 254|Caenorhabditis elegans Hypothetical ... 29 3.0
AC024801-11|AAN84814.2| 138|Caenorhabditis elegans Hypothetical... 29 4.0
AC024792-3|AAF60684.2| 388|Caenorhabditis elegans Hypothetical ... 28 6.9
>L18963-1|AAC14457.1| 152|Caenorhabditis elegans unc-60 protein.
Length = 152
Score = 110 bits (265), Expect = 8e-25
Identities = 59/152 (38%), Positives = 92/152 (60%), Gaps = 5/152 (3%)
Frame = +1
Query: 61 MASGVTVSDACKTTYEEIKKDKKHRYVVFYI-RDEKQIDVETVGERNAEYEQFLEDLQK- 234
MASGV V +CK Y+ + +H Y++F I +++ I VE VGE+NA Y +F+E+++K
Sbjct: 1 MASGVKVDPSCKNAYDLLHNKHQHSYIIFKIDKNDTAIVVEKVGEKNAPYAEFVEEMKKL 60
Query: 235 -GGTGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKS 411
ECRY D E T Q QG S K+ + +CPD A V+++MLY+SS ALK S
Sbjct: 61 VEDGKECRYAAVDVEVTVQRQGAEGTSTLNKVIFVQYCPDNAPVRRRMLYASSVRALKAS 120
Query: 412 LVGVQK--YIQATDLSEASHEAVEEKLRATDR 501
L G++ +QA+++S+ ++V+ L + R
Sbjct: 121 L-GLESLFQVQASEMSDLDEKSVKSDLMSNQR 151
>AF024494-2|AAL02463.1| 152|Caenorhabditis elegans Uncoordinated
protein 60, isoform c protein.
Length = 152
Score = 110 bits (265), Expect = 8e-25
Identities = 59/152 (38%), Positives = 92/152 (60%), Gaps = 5/152 (3%)
Frame = +1
Query: 61 MASGVTVSDACKTTYEEIKKDKKHRYVVFYI-RDEKQIDVETVGERNAEYEQFLEDLQK- 234
MASGV V +CK Y+ + +H Y++F I +++ I VE VGE+NA Y +F+E+++K
Sbjct: 1 MASGVKVDPSCKNAYDLLHNKHQHSYIIFKIDKNDTAIVVEKVGEKNAPYAEFVEEMKKL 60
Query: 235 -GGTGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKS 411
ECRY D E T Q QG S K+ + +CPD A V+++MLY+SS ALK S
Sbjct: 61 VEDGKECRYAAVDVEVTVQRQGAEGTSTLNKVIFVQYCPDNAPVRRRMLYASSVRALKAS 120
Query: 412 LVGVQK--YIQATDLSEASHEAVEEKLRATDR 501
L G++ +QA+++S+ ++V+ L + R
Sbjct: 121 L-GLESLFQVQASEMSDLDEKSVKSDLMSNQR 151
>L18963-2|AAC14458.1| 165|Caenorhabditis elegans unc-60 protein.
Length = 165
Score = 82.2 bits (194), Expect = 3e-16
Identities = 54/160 (33%), Positives = 89/160 (55%), Gaps = 18/160 (11%)
Frame = +1
Query: 61 MASGVTVSDACKTTYEEIKKDKK-HRYVVFYIRDEKQIDVETVGERN------------- 198
M+SGV V +T+++++ + +K +RY++F I DE ++ VE ++
Sbjct: 1 MSSGVMVDPDVQTSFQKLSEGRKEYRYIIFKI-DENKVIVEAAVTQDQLGITGDDYDDSS 59
Query: 199 -AEYEQFLEDLQK--GGTGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKK 369
A +++F+ED++ +CRY +FDF++T G SK K+ + CPD A +KK
Sbjct: 60 KAAFDKFVEDVKSRTDNLTDCRYAVFDFKFTCSRVGAG-TSKMDKIIFLQICPDGASIKK 118
Query: 370 KMLYSSSFDALKKSL-VGVQKYIQATDLSEASHEAVEEKL 486
KM+Y+SS A+K SL G Q +D SE SH+ + KL
Sbjct: 119 KMVYASSAAAIKTSLGTGKILQFQVSDESEMSHKELLNKL 158
>AF024494-3|AAL02461.1| 165|Caenorhabditis elegans Uncoordinated
protein 60, isoform a protein.
Length = 165
Score = 82.2 bits (194), Expect = 3e-16
Identities = 54/160 (33%), Positives = 89/160 (55%), Gaps = 18/160 (11%)
Frame = +1
Query: 61 MASGVTVSDACKTTYEEIKKDKK-HRYVVFYIRDEKQIDVETVGERN------------- 198
M+SGV V +T+++++ + +K +RY++F I DE ++ VE ++
Sbjct: 1 MSSGVMVDPDVQTSFQKLSEGRKEYRYIIFKI-DENKVIVEAAVTQDQLGITGDDYDDSS 59
Query: 199 -AEYEQFLEDLQK--GGTGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKK 369
A +++F+ED++ +CRY +FDF++T G SK K+ + CPD A +KK
Sbjct: 60 KAAFDKFVEDVKSRTDNLTDCRYAVFDFKFTCSRVGAG-TSKMDKIIFLQICPDGASIKK 118
Query: 370 KMLYSSSFDALKKSL-VGVQKYIQATDLSEASHEAVEEKL 486
KM+Y+SS A+K SL G Q +D SE SH+ + KL
Sbjct: 119 KMVYASSAAAIKTSLGTGKILQFQVSDESEMSHKELLNKL 158
>AF024494-1|AAL02462.2| 212|Caenorhabditis elegans Uncoordinated
protein 60, isoform b protein.
Length = 212
Score = 79.8 bits (188), Expect = 2e-15
Identities = 52/154 (33%), Positives = 86/154 (55%), Gaps = 18/154 (11%)
Frame = +1
Query: 61 MASGVTVSDACKTTYEEIKKDKK-HRYVVFYIRDEKQIDVETVGERN------------- 198
M+SGV V +T+++++ + +K +RY++F I DE ++ VE ++
Sbjct: 1 MSSGVMVDPDVQTSFQKLSEGRKEYRYIIFKI-DENKVIVEAAVTQDQLGITGDDYDDSS 59
Query: 199 -AEYEQFLEDLQK--GGTGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKK 369
A +++F+ED++ +CRY +FDF++T G SK K+ + CPD A +KK
Sbjct: 60 KAAFDKFVEDVKSRTDNLTDCRYAVFDFKFTCSRVGAG-TSKMDKIIFLQICPDGASIKK 118
Query: 370 KMLYSSSFDALKKSL-VGVQKYIQATDLSEASHE 468
KM+Y+SS A+K SL G Q +D SE SH+
Sbjct: 119 KMVYASSAAAIKTSLGTGKILQFQVSDESEMSHK 152
Score = 46.8 bits (106), Expect = 1e-05
Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Frame = +1
Query: 286 QCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQK--YIQATDLSEA 459
Q SE S K+ L++ CPD A V+++MLY+SS ALK SL G++ +QA+++S+
Sbjct: 142 QVSDESEMSHKE---LLNNCPDNAPVRRRMLYASSVRALKASL-GLESLFQVQASEMSDL 197
Query: 460 SHEAVEEKLRATDR 501
++V+ L + R
Sbjct: 198 DEKSVKSDLMSNQR 211
>Z48717-10|CAA88612.2| 423|Caenorhabditis elegans Hypothetical
protein ZK1321.4 protein.
Length = 423
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -1
Query: 275 SKSNRPYLHSPVPPFCRSSRNCSYSALRSPTVST 174
S N P HSP PPF S N SY+ ++ T +T
Sbjct: 188 SHHNIPIRHSPAPPFTTS--NSSYNNIKKSTDNT 219
>Z48584-9|CAA88478.2| 423|Caenorhabditis elegans Hypothetical
protein ZK1321.4 protein.
Length = 423
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -1
Query: 275 SKSNRPYLHSPVPPFCRSSRNCSYSALRSPTVST 174
S N P HSP PPF S N SY+ ++ T +T
Sbjct: 188 SHHNIPIRHSPAPPFTTS--NSSYNNIKKSTDNT 219
>Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical protein
F32H2.5 protein.
Length = 2586
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = -3
Query: 459 RFREVGRLDVLLNSDKGLFQSVERARVQHLLLD 361
RF E+G++D+ NS G+ + ++ V +LLD
Sbjct: 1828 RFLEIGKVDLSQNSSLGMAKLLDNVSVHGILLD 1860
>AC025723-3|AAK29935.1| 254|Caenorhabditis elegans Hypothetical
protein Y54F10AM.6 protein.
Length = 254
Score = 29.1 bits (62), Expect = 3.0
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = -3
Query: 570 RQGRSVGERVRFRRELVCKCC 508
R+GR G+ ++FR E VC+CC
Sbjct: 196 RKGR--GKNIKFRTEKVCRCC 214
>AC024801-11|AAN84814.2| 138|Caenorhabditis elegans Hypothetical
protein Y50D7A.10 protein.
Length = 138
Score = 28.7 bits (61), Expect = 4.0
Identities = 16/65 (24%), Positives = 31/65 (47%)
Frame = +1
Query: 289 CQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASHE 468
C+ S+ + L+ +CP+ + + +MLY+ S + + V K + D+ E E
Sbjct: 74 CKKHSDERISYPMLLIYYCPNGSSPELQMLYAGSRNFIVNE-CHVSKNTEIRDIDEIDDE 132
Query: 469 AVEEK 483
+E K
Sbjct: 133 LLESK 137
>AC024792-3|AAF60684.2| 388|Caenorhabditis elegans Hypothetical
protein Y48G1A.3 protein.
Length = 388
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 277 YTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLY 381
+ H G+ E + +F S PD+ K KKK+LY
Sbjct: 161 FIHSLCGSHEIHPVKIIFRFSKYPDSLKYKKKILY 195
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,380,382
Number of Sequences: 27780
Number of extensions: 265433
Number of successful extensions: 998
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 988
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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