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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0100
         (724 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L18963-1|AAC14457.1|  152|Caenorhabditis elegans unc-60 protein.      110   1e-24
AF024494-2|AAL02463.1|  152|Caenorhabditis elegans Uncoordinated...   110   1e-24
L18963-2|AAC14458.1|  165|Caenorhabditis elegans unc-60 protein.       82   5e-16
AF024494-3|AAL02461.1|  165|Caenorhabditis elegans Uncoordinated...    82   5e-16
AF024494-1|AAL02462.2|  212|Caenorhabditis elegans Uncoordinated...    80   2e-15
Z48717-10|CAA88612.2|  423|Caenorhabditis elegans Hypothetical p...    29   2.5  
Z48584-9|CAA88478.2|  423|Caenorhabditis elegans Hypothetical pr...    29   2.5  
Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical pr...    29   3.4  
AC025723-3|AAK29935.1|  254|Caenorhabditis elegans Hypothetical ...    29   3.4  
AC024801-11|AAN84814.2|  138|Caenorhabditis elegans Hypothetical...    28   5.9  
AC024792-3|AAF60684.2|  388|Caenorhabditis elegans Hypothetical ...    28   7.8  

>L18963-1|AAC14457.1|  152|Caenorhabditis elegans unc-60 protein.
          Length = 152

 Score =  110 bits (264), Expect = 1e-24
 Identities = 59/152 (38%), Positives = 92/152 (60%), Gaps = 5/152 (3%)
 Frame = +3

Query: 51  MASGVTVSDACKTTYEEIKKDKKHRYVVFYI-RDEKQIDVETVGERNAEYEQFLEDLQK- 224
           MASGV V  +CK  Y+ +    +H Y++F I +++  I VE VGE+NA Y +F+E+++K 
Sbjct: 1   MASGVKVDPSCKNAYDLLHNKHQHSYIIFKIDKNDTAIVVEKVGEKNAPYAEFVEEMKKL 60

Query: 225 -GGTGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKS 401
                ECRY   D E T Q QG    S   K+  + +CPD A V+++MLY+SS  ALK S
Sbjct: 61  VEDGKECRYAAVDVEVTVQRQGAEGTSTLNKVIFVQYCPDNAPVRRRMLYASSVRALKAS 120

Query: 402 LVGVQK--YIQATDLSEASHEAVEXKLRATDR 491
           L G++    +QA+++S+   ++V+  L +  R
Sbjct: 121 L-GLESLFQVQASEMSDLDEKSVKSDLMSNQR 151


>AF024494-2|AAL02463.1|  152|Caenorhabditis elegans Uncoordinated
           protein 60, isoform c protein.
          Length = 152

 Score =  110 bits (264), Expect = 1e-24
 Identities = 59/152 (38%), Positives = 92/152 (60%), Gaps = 5/152 (3%)
 Frame = +3

Query: 51  MASGVTVSDACKTTYEEIKKDKKHRYVVFYI-RDEKQIDVETVGERNAEYEQFLEDLQK- 224
           MASGV V  +CK  Y+ +    +H Y++F I +++  I VE VGE+NA Y +F+E+++K 
Sbjct: 1   MASGVKVDPSCKNAYDLLHNKHQHSYIIFKIDKNDTAIVVEKVGEKNAPYAEFVEEMKKL 60

Query: 225 -GGTGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKS 401
                ECRY   D E T Q QG    S   K+  + +CPD A V+++MLY+SS  ALK S
Sbjct: 61  VEDGKECRYAAVDVEVTVQRQGAEGTSTLNKVIFVQYCPDNAPVRRRMLYASSVRALKAS 120

Query: 402 LVGVQK--YIQATDLSEASHEAVEXKLRATDR 491
           L G++    +QA+++S+   ++V+  L +  R
Sbjct: 121 L-GLESLFQVQASEMSDLDEKSVKSDLMSNQR 151


>L18963-2|AAC14458.1|  165|Caenorhabditis elegans unc-60 protein.
          Length = 165

 Score = 81.8 bits (193), Expect = 5e-16
 Identities = 54/160 (33%), Positives = 89/160 (55%), Gaps = 18/160 (11%)
 Frame = +3

Query: 51  MASGVTVSDACKTTYEEIKKDKK-HRYVVFYIRDEKQIDVETVGERN------------- 188
           M+SGV V    +T+++++ + +K +RY++F I DE ++ VE    ++             
Sbjct: 1   MSSGVMVDPDVQTSFQKLSEGRKEYRYIIFKI-DENKVIVEAAVTQDQLGITGDDYDDSS 59

Query: 189 -AEYEQFLEDLQK--GGTGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKK 359
            A +++F+ED++       +CRY +FDF++T    G    SK  K+  +  CPD A +KK
Sbjct: 60  KAAFDKFVEDVKSRTDNLTDCRYAVFDFKFTCSRVGAG-TSKMDKIIFLQICPDGASIKK 118

Query: 360 KMLYSSSFDALKKSL-VGVQKYIQATDLSEASHEAVEXKL 476
           KM+Y+SS  A+K SL  G     Q +D SE SH+ +  KL
Sbjct: 119 KMVYASSAAAIKTSLGTGKILQFQVSDESEMSHKELLNKL 158


>AF024494-3|AAL02461.1|  165|Caenorhabditis elegans Uncoordinated
           protein 60, isoform a protein.
          Length = 165

 Score = 81.8 bits (193), Expect = 5e-16
 Identities = 54/160 (33%), Positives = 89/160 (55%), Gaps = 18/160 (11%)
 Frame = +3

Query: 51  MASGVTVSDACKTTYEEIKKDKK-HRYVVFYIRDEKQIDVETVGERN------------- 188
           M+SGV V    +T+++++ + +K +RY++F I DE ++ VE    ++             
Sbjct: 1   MSSGVMVDPDVQTSFQKLSEGRKEYRYIIFKI-DENKVIVEAAVTQDQLGITGDDYDDSS 59

Query: 189 -AEYEQFLEDLQK--GGTGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKK 359
            A +++F+ED++       +CRY +FDF++T    G    SK  K+  +  CPD A +KK
Sbjct: 60  KAAFDKFVEDVKSRTDNLTDCRYAVFDFKFTCSRVGAG-TSKMDKIIFLQICPDGASIKK 118

Query: 360 KMLYSSSFDALKKSL-VGVQKYIQATDLSEASHEAVEXKL 476
           KM+Y+SS  A+K SL  G     Q +D SE SH+ +  KL
Sbjct: 119 KMVYASSAAAIKTSLGTGKILQFQVSDESEMSHKELLNKL 158


>AF024494-1|AAL02462.2|  212|Caenorhabditis elegans Uncoordinated
           protein 60, isoform b protein.
          Length = 212

 Score = 79.8 bits (188), Expect = 2e-15
 Identities = 52/154 (33%), Positives = 86/154 (55%), Gaps = 18/154 (11%)
 Frame = +3

Query: 51  MASGVTVSDACKTTYEEIKKDKK-HRYVVFYIRDEKQIDVETVGERN------------- 188
           M+SGV V    +T+++++ + +K +RY++F I DE ++ VE    ++             
Sbjct: 1   MSSGVMVDPDVQTSFQKLSEGRKEYRYIIFKI-DENKVIVEAAVTQDQLGITGDDYDDSS 59

Query: 189 -AEYEQFLEDLQK--GGTGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKK 359
            A +++F+ED++       +CRY +FDF++T    G    SK  K+  +  CPD A +KK
Sbjct: 60  KAAFDKFVEDVKSRTDNLTDCRYAVFDFKFTCSRVGAG-TSKMDKIIFLQICPDGASIKK 118

Query: 360 KMLYSSSFDALKKSL-VGVQKYIQATDLSEASHE 458
           KM+Y+SS  A+K SL  G     Q +D SE SH+
Sbjct: 119 KMVYASSAAAIKTSLGTGKILQFQVSDESEMSHK 152



 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
 Frame = +3

Query: 276 QCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQK--YIQATDLSEA 449
           Q    SE S K+   L++ CPD A V+++MLY+SS  ALK SL G++    +QA+++S+ 
Sbjct: 142 QVSDESEMSHKE---LLNNCPDNAPVRRRMLYASSVRALKASL-GLESLFQVQASEMSDL 197

Query: 450 SHEAVEXKLRATDR 491
             ++V+  L +  R
Sbjct: 198 DEKSVKSDLMSNQR 211


>Z48717-10|CAA88612.2|  423|Caenorhabditis elegans Hypothetical
           protein ZK1321.4 protein.
          Length = 423

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -1

Query: 265 SKSNRPYLHSPVPPFCRSSRNCSYSALRSPTVST 164
           S  N P  HSP PPF  S  N SY+ ++  T +T
Sbjct: 188 SHHNIPIRHSPAPPFTTS--NSSYNNIKKSTDNT 219


>Z48584-9|CAA88478.2|  423|Caenorhabditis elegans Hypothetical
           protein ZK1321.4 protein.
          Length = 423

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -1

Query: 265 SKSNRPYLHSPVPPFCRSSRNCSYSALRSPTVST 164
           S  N P  HSP PPF  S  N SY+ ++  T +T
Sbjct: 188 SHHNIPIRHSPAPPFTTS--NSSYNNIKKSTDNT 219


>Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical protein
            F32H2.5 protein.
          Length = 2586

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -3

Query: 449  RFREVGRLDVLLNSDKGLFQSVERARVQHLLLD 351
            RF E+G++D+  NS  G+ + ++   V  +LLD
Sbjct: 1828 RFLEIGKVDLSQNSSLGMAKLLDNVSVHGILLD 1860


>AC025723-3|AAK29935.1|  254|Caenorhabditis elegans Hypothetical
           protein Y54F10AM.6 protein.
          Length = 254

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -3

Query: 560 RQGRSVGERVRFRRELVCKCC 498
           R+GR  G+ ++FR E VC+CC
Sbjct: 196 RKGR--GKNIKFRTEKVCRCC 214


>AC024801-11|AAN84814.2|  138|Caenorhabditis elegans Hypothetical
           protein Y50D7A.10 protein.
          Length = 138

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/65 (24%), Positives = 31/65 (47%)
 Frame = +3

Query: 279 CQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASHE 458
           C+  S+      + L+ +CP+ +  + +MLY+ S + +      V K  +  D+ E   E
Sbjct: 74  CKKHSDERISYPMLLIYYCPNGSSPELQMLYAGSRNFIVNE-CHVSKNTEIRDIDEIDDE 132

Query: 459 AVEXK 473
            +E K
Sbjct: 133 LLESK 137


>AC024792-3|AAF60684.2|  388|Caenorhabditis elegans Hypothetical
           protein Y48G1A.3 protein.
          Length = 388

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 267 YTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLY 371
           + H   G+ E    + +F  S  PD+ K KKK+LY
Sbjct: 161 FIHSLCGSHEIHPVKIIFRFSKYPDSLKYKKKILY 195


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,309,046
Number of Sequences: 27780
Number of extensions: 274217
Number of successful extensions: 1004
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 994
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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