Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0069
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40943-5|AAK39235.2|  279|Caenorhabditis elegans Hypothetical pr...    30   1.8  
AF099919-4|AAC68791.1|  230|Caenorhabditis elegans Hypothetical ...    28   7.4  

>U40943-5|AAK39235.2|  279|Caenorhabditis elegans Hypothetical
           protein F47F2.3 protein.
          Length = 279

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 442 LVIPADTCRVCYCQGGXVRCXRIACFLR 525
           L++P     VC+C  G VRC  + C ++
Sbjct: 153 LMVPCIFDNVCHCPAGYVRCSEMTCCMK 180


>AF099919-4|AAC68791.1|  230|Caenorhabditis elegans Hypothetical
           protein F40G9.12 protein.
          Length = 230

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +3

Query: 213 VDCXLGDVXYLPGDEIPRFXPSAXKSKCSDGGGVQCEKHXCES 341
           + C +  + Y     IPR  PS  KS C D     C++H C++
Sbjct: 89  LQCGVCQLTY-SSQRIPRIHPSCGKSVCED-----CKEHECKA 125


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,967,017
Number of Sequences: 27780
Number of extensions: 205742
Number of successful extensions: 416
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 416
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)