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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0053
         (800 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55375-5|AAC69045.1|  126|Caenorhabditis elegans Profilin protei...    91   1e-18
AY530910-1|AAT01435.1|  126|Caenorhabditis elegans profilin-3 pr...    91   1e-18
AY530908-1|AAT01433.1|  132|Caenorhabditis elegans profilin-1 pr...    71   1e-12
AL034393-15|CAA22318.1|  132|Caenorhabditis elegans Hypothetical...    71   1e-12
U40941-2|AAA81708.3|  131|Caenorhabditis elegans Profilin protei...    67   2e-11
AY530909-1|AAT01434.1|  131|Caenorhabditis elegans profilin-2 pr...    67   2e-11

>U55375-5|AAC69045.1|  126|Caenorhabditis elegans Profilin protein 3
           protein.
          Length = 126

 Score = 90.6 bits (215), Expect = 1e-18
 Identities = 46/126 (36%), Positives = 68/126 (53%)
 Frame = +2

Query: 50  MSWQDYVDKQLMASRCVTKAAIAGHDGNVWAKSEGFEISKDEVAKIVAGFENESLLTSGG 229
           MSW D ++  L+ S  V+KAAI G DG VWAKS+ F IS +E       F +   L   G
Sbjct: 1   MSWSDIINNNLIGSGNVSKAAILGFDGAVWAKSDNFNISVEEAVAAGKAFTSLDALLGTG 60

Query: 230 VTIAGTRYIYLSGTDHIIRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGEY 409
           + + G +++ L+  +  I  K G  G    KT QAV+IS+YE+ +QP+  +     L +Y
Sbjct: 61  LRLEGQKFLVLNADNDRIIGKQGGSGFFIYKTIQAVIISIYEKGLQPEMCSKTTGALADY 120

Query: 410 LITCGY 427
             +  Y
Sbjct: 121 FRSIKY 126


>AY530910-1|AAT01435.1|  126|Caenorhabditis elegans profilin-3
           protein.
          Length = 126

 Score = 90.6 bits (215), Expect = 1e-18
 Identities = 46/126 (36%), Positives = 68/126 (53%)
 Frame = +2

Query: 50  MSWQDYVDKQLMASRCVTKAAIAGHDGNVWAKSEGFEISKDEVAKIVAGFENESLLTSGG 229
           MSW D ++  L+ S  V+KAAI G DG VWAKS+ F IS +E       F +   L   G
Sbjct: 1   MSWSDIINNNLIGSGNVSKAAILGFDGAVWAKSDNFNISVEEAVAAGKAFTSLDALLGTG 60

Query: 230 VTIAGTRYIYLSGTDHIIRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGEY 409
           + + G +++ L+  +  I  K G  G    KT QAV+IS+YE+ +QP+  +     L +Y
Sbjct: 61  LRLEGQKFLVLNADNDRIIGKQGGSGFFIYKTIQAVIISIYEKGLQPEMCSKTTGALADY 120

Query: 410 LITCGY 427
             +  Y
Sbjct: 121 FRSIKY 126


>AY530908-1|AAT01433.1|  132|Caenorhabditis elegans profilin-1
           protein.
          Length = 132

 Score = 70.9 bits (166), Expect = 1e-12
 Identities = 41/129 (31%), Positives = 66/129 (51%), Gaps = 5/129 (3%)
 Frame = +2

Query: 56  WQDYVDKQLMASRCVTKAAIAGH-DGNVWAKSEG---FEISKDEVAKIVAGFENESLLTS 223
           W  Y+D    A+  + + AI G  DG+VWA++E    F+ S++E+   VA F + + + +
Sbjct: 4   WNAYIDTMTAAAPSIKRCAIVGAADGSVWARTEADNVFKASEEELKTFVALFNDVTQVPA 63

Query: 224 GGVTIAGTRYIYLSGTDHIIRAKLGKVGVHCMKTQQAVVISLYEEPIQ-PQQAASVVEKL 400
            G  I G  Y+     + +I  K    G   +KT+ AV+I++YE P +   Q    VE +
Sbjct: 64  KGADIEGVHYVVPRTEESLIFGKKENTGFFAVKTKSAVLIAVYEGPNEVAAQVRKAVESM 123

Query: 401 GEYLITCGY 427
             YL   GY
Sbjct: 124 QTYLNNAGY 132


>AL034393-15|CAA22318.1|  132|Caenorhabditis elegans Hypothetical
           protein Y18D10A.20 protein.
          Length = 132

 Score = 70.9 bits (166), Expect = 1e-12
 Identities = 41/129 (31%), Positives = 66/129 (51%), Gaps = 5/129 (3%)
 Frame = +2

Query: 56  WQDYVDKQLMASRCVTKAAIAGH-DGNVWAKSEG---FEISKDEVAKIVAGFENESLLTS 223
           W  Y+D    A+  + + AI G  DG+VWA++E    F+ S++E+   VA F + + + +
Sbjct: 4   WNAYIDTMTAAAPSIKRCAIVGAADGSVWARTEADNVFKASEEELKTFVALFNDVTQVPA 63

Query: 224 GGVTIAGTRYIYLSGTDHIIRAKLGKVGVHCMKTQQAVVISLYEEPIQ-PQQAASVVEKL 400
            G  I G  Y+     + +I  K    G   +KT+ AV+I++YE P +   Q    VE +
Sbjct: 64  KGADIEGVHYVVPRTEESLIFGKKENTGFFAVKTKSAVLIAVYEGPNEVAAQVRKAVESM 123

Query: 401 GEYLITCGY 427
             YL   GY
Sbjct: 124 QTYLNNAGY 132


>U40941-2|AAA81708.3|  131|Caenorhabditis elegans Profilin protein 2
           protein.
          Length = 131

 Score = 66.9 bits (156), Expect = 2e-11
 Identities = 39/128 (30%), Positives = 63/128 (49%), Gaps = 4/128 (3%)
 Frame = +2

Query: 56  WQDYVDKQLMASRCVTKAAIAGHDGNVWAKS---EGFEISKDEVAKIVAGFENESLLTSG 226
           W DY+      S  + +AAI G DG+VWA+S     F  ++ E+ +  A F + + +   
Sbjct: 4   WDDYIKLLFGKSPAIKRAAIIGSDGSVWARSGDANAFRATEVELKRFAALFNDINSVPGT 63

Query: 227 GVTIAGTRYIYLSGTDHIIRAKLGKVGVHCMKTQQAVVISLYE-EPIQPQQAASVVEKLG 403
           G  +    YI     + +I  K  + G    KT QA+VI++YE +  Q     + VE + 
Sbjct: 64  GADLEEIHYIVPRVEEKLIFGKKEQTGFFAAKTNQAIVIAMYEGDNAQSASVRAGVEYIA 123

Query: 404 EYLITCGY 427
           +YL + GY
Sbjct: 124 QYLASSGY 131


>AY530909-1|AAT01434.1|  131|Caenorhabditis elegans profilin-2
           protein.
          Length = 131

 Score = 66.9 bits (156), Expect = 2e-11
 Identities = 39/128 (30%), Positives = 63/128 (49%), Gaps = 4/128 (3%)
 Frame = +2

Query: 56  WQDYVDKQLMASRCVTKAAIAGHDGNVWAKS---EGFEISKDEVAKIVAGFENESLLTSG 226
           W DY+      S  + +AAI G DG+VWA+S     F  ++ E+ +  A F + + +   
Sbjct: 4   WDDYIKLLFGKSPAIKRAAIIGSDGSVWARSGDANAFRATEVELKRFAALFNDINSVPGT 63

Query: 227 GVTIAGTRYIYLSGTDHIIRAKLGKVGVHCMKTQQAVVISLYE-EPIQPQQAASVVEKLG 403
           G  +    YI     + +I  K  + G    KT QA+VI++YE +  Q     + VE + 
Sbjct: 64  GADLEEIHYIVPRVEEKLIFGKKEQTGFFAAKTNQAIVIAMYEGDNAQSASVRAGVEYIA 123

Query: 404 EYLITCGY 427
           +YL + GY
Sbjct: 124 QYLASSGY 131


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,882,606
Number of Sequences: 27780
Number of extensions: 374305
Number of successful extensions: 832
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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