Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0030
         (800 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68227-14|CAJ80809.1|  448|Caenorhabditis elegans Hypothetical p...    28   8.9  
U97593-5|AAB52880.1| 1175|Caenorhabditis elegans Prion-like-(q/n...    28   8.9  

>Z68227-14|CAJ80809.1|  448|Caenorhabditis elegans Hypothetical
           protein F49C12.7b protein.
          Length = 448

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = -2

Query: 355 QTYYQHTVRLINQVKRRDEFFFVVSKPLLVVMRS 254
           QT+ Q+   L++  +R  EF  ++S+P+ VV +S
Sbjct: 410 QTFLQNQWLLVHLFRRSKEFIRILSQPMKVVRKS 443


>U97593-5|AAB52880.1| 1175|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 22,
           isoform a protein.
          Length = 1175

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 25/112 (22%), Positives = 50/112 (44%), Gaps = 3/112 (2%)
 Frame = -1

Query: 635 PLLSLPETSLLF*RSISLSVLQPDAQATYRKPSRQSRLVDRTTHCXGRLAVRLFFFITSI 456
           PL SLP++S+   ++ SL+ ++     +Y KP+     +     C  R+  R F+     
Sbjct: 49  PLFSLPQSSIDDIQNTSLNSIRSSHPFSYTKPTPGGPKLHNRIKCP-RVVPRSFWLSFEE 107

Query: 455 DRQV-YGLPGVKSPELIDFEK*V*ISVFSKKRCLSDLLPTYG--PFDKPGEE 309
           D ++   L   + P+ +  +    + ++SK+  +       G  P D P +E
Sbjct: 108 DEELDVPLLEPEMPQTVHLQYNSPMGLYSKEAAVEQFQQQIGETPNDLPAQE 159


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,976,217
Number of Sequences: 27780
Number of extensions: 326219
Number of successful extensions: 551
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)