Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0191
         (663 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39742-5|AAK39199.1|  767|Caenorhabditis elegans Hypothetical pr...    29   3.9  
AF067217-2|AAF99977.1| 1887|Caenorhabditis elegans Heavy chain, ...    28   6.8  

>U39742-5|AAK39199.1|  767|Caenorhabditis elegans Hypothetical
           protein C25F6.4 protein.
          Length = 767

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -2

Query: 377 RRPSHIGEVWKSVPLSVLNNSSIILQDGASIGTRYYDM 264
           R PSH  ++  S P S++NN      D  ++ T  Y+M
Sbjct: 659 RGPSHHAQLRYSAPESIVNNEFTHKSDAWAVATTVYEM 696


>AF067217-2|AAF99977.1| 1887|Caenorhabditis elegans Heavy chain,
           unconventional myosinprotein 7 protein.
          Length = 1887

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 22/59 (37%), Positives = 25/59 (42%)
 Frame = +1

Query: 187 SLTTLVIKYIKFPNSAYFNQLYNAQFIS*YLVPMLAPSWRIIELLFNTESGTLFQTSPM 363
           S   L I Y      +YFNQ         YL   +  SW  IE   NTE   LFQ SP+
Sbjct: 555 SFEQLCINYANEKLQSYFNQHIFQFEQEEYLKEGI--SWTNIEYTDNTECVQLFQVSPI 611


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,045,273
Number of Sequences: 27780
Number of extensions: 249901
Number of successful extensions: 423
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 423
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)