Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10b03
         (676 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58748-4|AAB52967.1|  522|Caenorhabditis elegans Hypothetical pr...    46   2e-05
U00047-9|AAY43977.1|  293|Caenorhabditis elegans Hypothetical pr...    29   3.0  
Z82086-2|CAB04995.2|  309|Caenorhabditis elegans Hypothetical pr...    28   5.3  
AF016420-8|AAB65305.1|  364|Caenorhabditis elegans Serpentine re...    28   7.0  

>U58748-4|AAB52967.1|  522|Caenorhabditis elegans Hypothetical
           protein ZK180.3a protein.
          Length = 522

 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 25/82 (30%), Positives = 43/82 (52%)
 Frame = +1

Query: 430 MSSLENASFNILIQILFRCITFIINAWVIRNVGHEILGIMNVRXXXXXXXXXXXSREPFN 609
           MS   +   N+  Q++ R I+F IN +++R + +++LG++NVR           +REP  
Sbjct: 1   MSLFSSLVHNVRGQLIARIISFAINMYLLRRINNDVLGLVNVRLTLLYSSILFLTREPLR 60

Query: 610 RACLGRTDGFGWSHLINQIWLS 675
           +A + R         IN +WLS
Sbjct: 61  KAEIIRG---SLPKFINLLWLS 79


>U00047-9|AAY43977.1|  293|Caenorhabditis elegans Hypothetical
           protein ZK418.10 protein.
          Length = 293

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = -2

Query: 546 YAQYFMTNISDHPCVNNKCNTPE*YLY*NIERRVFKATHQNIS 418
           Y QY+   + +H C+ N+ N P  Y       ++ + THQ ++
Sbjct: 229 YQQYYSAALINHCCLTNQQNAPSRYSELLSLYQIIEETHQKVN 271


>Z82086-2|CAB04995.2|  309|Caenorhabditis elegans Hypothetical
           protein ZK228.3 protein.
          Length = 309

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +2

Query: 203 IITDLITLSNEVDSVAFGPSENFKKISITFDDHWYIICLSNKK 331
           +   LI LS E++  A  P + ++  S  FD++W+I  +  +K
Sbjct: 11  VFDQLINLSGELNGWAHQPYD-YRFYSENFDEYWFIAVVDKEK 52


>AF016420-8|AAB65305.1|  364|Caenorhabditis elegans Serpentine
           receptor, class r protein5 protein.
          Length = 364

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -3

Query: 152 HRPLSTPGSRFGLEFYPL*LQRFLQFSNLELEETAKTRTM 33
           H   S+   +  L F  + L+R +++ N+ELEE   T+T+
Sbjct: 171 HAICSSINEKIFLSFNDISLKREIEYFNVELEEAQTTKTL 210


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,949,640
Number of Sequences: 27780
Number of extensions: 264750
Number of successful extensions: 580
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)