Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0096
         (632 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z19152-4|CAA79538.2|  455|Caenorhabditis elegans Hypothetical pr...    33   0.22 
AY533305-1|AAS21307.1|  455|Caenorhabditis elegans BRE-3 protein.      33   0.22 
Z78546-7|CAB01772.1|  375|Caenorhabditis elegans Hypothetical pr...    28   6.4  
AL023830-4|CAA19474.1|  375|Caenorhabditis elegans Hypothetical ...    28   6.4  
AY204203-1|AAO39204.1|  391|Caenorhabditis elegans nuclear recep...    27   8.4  
AF016675-7|AAB66135.1|  387|Caenorhabditis elegans Hypothetical ...    27   8.4  
AF016675-6|AAF02171.2|  391|Caenorhabditis elegans Nuclear hormo...    27   8.4  

>Z19152-4|CAA79538.2|  455|Caenorhabditis elegans Hypothetical
           protein B0464.4 protein.
          Length = 455

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
 Frame = -2

Query: 556 SLYKMTRVPTCS-QIFNVPLCGAKACLPFSYLQR---ELHAYAY*FIIKLCFKLKLRNRI 389
           SLY    +P  S Q+F  PL     CLPF +L      L+ Y Y F +   F  K RN +
Sbjct: 350 SLYAWATMPLTSLQVFLCPLFPLPRCLPFDFLLSFVGALNLYMYIFGVVKSFSHKYRNSL 409


>AY533305-1|AAS21307.1|  455|Caenorhabditis elegans BRE-3 protein.
          Length = 455

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
 Frame = -2

Query: 556 SLYKMTRVPTCS-QIFNVPLCGAKACLPFSYLQR---ELHAYAY*FIIKLCFKLKLRNRI 389
           SLY    +P  S Q+F  PL     CLPF +L      L+ Y Y F +   F  K RN +
Sbjct: 350 SLYAWATMPLTSLQVFLCPLFPLPRCLPFDFLLSFVGALNLYMYIFGVVKSFSHKYRNSL 409


>Z78546-7|CAB01772.1|  375|Caenorhabditis elegans Hypothetical
           protein T21H8.4 protein.
          Length = 375

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 539 PCSYMLSNFQCPPLRG*SMFTFQLFTT 459
           PC  +L  + C  +RG  +F F L TT
Sbjct: 86  PCDLLLKTYFCSKIRGTFLFAFCLVTT 112


>AL023830-4|CAA19474.1|  375|Caenorhabditis elegans Hypothetical
           protein T21H8.4 protein.
          Length = 375

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 539 PCSYMLSNFQCPPLRG*SMFTFQLFTT 459
           PC  +L  + C  +RG  +F F L TT
Sbjct: 86  PCDLLLKTYFCSKIRGTFLFAFCLVTT 112


>AY204203-1|AAO39204.1|  391|Caenorhabditis elegans nuclear receptor
           NHR-115 protein.
          Length = 391

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 63  CFTSNNKRSTGPILPNDFHFQTIILSSLSQFYFS 164
           CF    KR  G IL    HFQ ++ + L  +Y +
Sbjct: 301 CFEYAGKRFQGEILKITDHFQQVLSNDLHHYYIT 334


>AF016675-7|AAB66135.1|  387|Caenorhabditis elegans Hypothetical
           protein T27B7.3 protein.
          Length = 387

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 63  CFTSNNKRSTGPILPNDFHFQTIILSSLSQFYFS 164
           CF    KR  G IL    HFQ ++ + L  +Y +
Sbjct: 297 CFEYAGKRFQGDILKITDHFQQVLSNDLHHYYIT 330


>AF016675-6|AAF02171.2|  391|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 115 protein.
          Length = 391

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 63  CFTSNNKRSTGPILPNDFHFQTIILSSLSQFYFS 164
           CF    KR  G IL    HFQ ++ + L  +Y +
Sbjct: 301 CFEYAGKRFQGEILKITDHFQQVLSNDLHHYYIT 334


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,342,860
Number of Sequences: 27780
Number of extensions: 260092
Number of successful extensions: 476
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)