Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120063.Seq
         (784 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46676-4|CAA86669.2|  822|Caenorhabditis elegans Hypothetical pr...    30   2.1  
AF173372-1|AAD51972.1|  822|Caenorhabditis elegans transmembrane...    30   2.1  
Z73974-1|CAA98270.2|  349|Caenorhabditis elegans Hypothetical pr...    29   2.8  
U23523-11|AAP68942.2|  324|Caenorhabditis elegans Troponin t pro...    29   5.0  
U23523-10|AAP68941.1|  428|Caenorhabditis elegans Troponin t pro...    29   5.0  
Z75536-1|CAE17805.1|  195|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z69385-3|CAA93426.2| 1477|Caenorhabditis elegans Hypothetical pr...    28   6.6  
U70852-10|AAO91718.1|  505|Caenorhabditis elegans Hypothetical p...    28   6.6  
U70852-9|ABB51183.1|  784|Caenorhabditis elegans Hypothetical pr...    28   6.6  
U70852-8|ABB51182.1|  868|Caenorhabditis elegans Hypothetical pr...    28   6.6  
U40933-9|ABD63229.1|  867|Caenorhabditis elegans Hypothetical pr...    28   6.6  
U40933-8|AAA81677.1| 1030|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z35598-3|CAA84655.3|  525|Caenorhabditis elegans Hypothetical pr...    28   8.7  

>Z46676-4|CAA86669.2|  822|Caenorhabditis elegans Hypothetical
           protein C08B11.4 protein.
          Length = 822

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = -2

Query: 315 FIKRYHKHTIIYHVIVVCIFDTTLLTYLAN 226
           + KRY + T  Y  I+V +FD TL TY++N
Sbjct: 472 YYKRYIRITPTY--IIVMLFDVTLFTYISN 499


>AF173372-1|AAD51972.1|  822|Caenorhabditis elegans transmembrane
           protein NRF-6 protein.
          Length = 822

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = -2

Query: 315 FIKRYHKHTIIYHVIVVCIFDTTLLTYLAN 226
           + KRY + T  Y  I+V +FD TL TY++N
Sbjct: 472 YYKRYIRITPTY--IIVMLFDVTLFTYISN 499


>Z73974-1|CAA98270.2|  349|Caenorhabditis elegans Hypothetical
           protein F29F11.3 protein.
          Length = 349

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 4/81 (4%)
 Frame = +1

Query: 184 VCG*KK*SKAV*NYICQVREQC-GVEYTNNY---YMVDNRVFVVTFDKIRFMISYNLVKE 351
           +C   K   AV NY+C + + C  +   NN           F+ T +  +F  + N V  
Sbjct: 243 LCDISKKELAVYNYLCDIDKHCIHIAQQNNQQKSVQTLTDAFICTLENEKFYSTINTVLS 302

Query: 352 TGIEIPHSQDVCNDETAAQNC 414
           T  +I H+  +  D++    C
Sbjct: 303 TAAKI-HNTSIGKDDSKCSFC 322


>U23523-11|AAP68942.2|  324|Caenorhabditis elegans Troponin t
           protein 2, isoform b protein.
          Length = 324

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +3

Query: 600 PIMLSRKESNEIETASNNFFVSPYVSQILKYSESVKFPDNP 722
           P    RKE+ E+E    N     YV Q+    ++ K P NP
Sbjct: 244 PAEWGRKENEELEQIRKNLEPPKYVEQVKAEGDAAKPPVNP 284


>U23523-10|AAP68941.1|  428|Caenorhabditis elegans Troponin t
           protein 2, isoform a protein.
          Length = 428

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +3

Query: 600 PIMLSRKESNEIETASNNFFVSPYVSQILKYSESVKFPDNP 722
           P    RKE+ E+E    N     YV Q+    ++ K P NP
Sbjct: 348 PAEWGRKENEELEQIRKNLEPPKYVEQVKAEGDAAKPPVNP 388


>Z75536-1|CAE17805.1|  195|Caenorhabditis elegans Hypothetical
           protein F18C12.4 protein.
          Length = 195

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 56  VASTQEITHYFTNDFAPYLMRFDDNDY 136
           V+++Q+++  F  DF P L    DNDY
Sbjct: 145 VSTSQKLSETFERDFDPVLEGMSDNDY 171


>Z69385-3|CAA93426.2| 1477|Caenorhabditis elegans Hypothetical protein
            ZK593.4 protein.
          Length = 1477

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
 Frame = +3

Query: 582  KNLFTLPIMLSRKESNEIETASNNFFVSPYVSQILKYSESVKFPDNPPNKYV-VDNLNLI 758
            K +F L  ML  +++N +E  +NNF  +P + Q+    +S++  D    KY+ +    +I
Sbjct: 986  KLVFELQQML--RDANTLEVIANNFCENPALDQLQSIWQSLRETDWFYEKYINMVRYEII 1043

Query: 759  VTKKVRS 779
               K++S
Sbjct: 1044 HVAKIKS 1050


>U70852-10|AAO91718.1|  505|Caenorhabditis elegans Hypothetical
           protein F45E4.7b protein.
          Length = 505

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = -3

Query: 182 CNNQSRTYGRRTC 144
           CNN SR Y RRTC
Sbjct: 492 CNNSSRLYNRRTC 504


>U70852-9|ABB51183.1|  784|Caenorhabditis elegans Hypothetical
           protein F45E4.7c protein.
          Length = 784

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = -3

Query: 182 CNNQSRTYGRRTC 144
           CNN SR Y RRTC
Sbjct: 771 CNNSSRLYNRRTC 783


>U70852-8|ABB51182.1|  868|Caenorhabditis elegans Hypothetical
           protein F45E4.7a protein.
          Length = 868

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = -3

Query: 182 CNNQSRTYGRRTC 144
           CNN SR Y RRTC
Sbjct: 855 CNNSSRLYNRRTC 867


>U40933-9|ABD63229.1|  867|Caenorhabditis elegans Hypothetical
           protein F20D12.1b protein.
          Length = 867

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +3

Query: 630 EIETASNNFFVSPYVSQILKYSESVKFP-DNPPNKYVVDNLNL 755
           E++  S  ++ S  +SQ+L+Y+    FP D PPN+ V  N+ L
Sbjct: 219 ELDPQSTQYYASIPLSQMLQYA----FPRDFPPNRIVNPNMKL 257


>U40933-8|AAA81677.1| 1030|Caenorhabditis elegans Hypothetical
           protein F20D12.1a protein.
          Length = 1030

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +3

Query: 630 EIETASNNFFVSPYVSQILKYSESVKFP-DNPPNKYVVDNLNL 755
           E++  S  ++ S  +SQ+L+Y+    FP D PPN+ V  N+ L
Sbjct: 382 ELDPQSTQYYASIPLSQMLQYA----FPRDFPPNRIVNPNMKL 420


>Z35598-3|CAA84655.3|  525|Caenorhabditis elegans Hypothetical
           protein F10F2.5 protein.
          Length = 525

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +3

Query: 579 DKNLFTLPIMLSRKESNEIETASNNFFVSPYVSQILKYSESVKFPD 716
           D   ++  ++LSR+E+  +E  S+  +   Y  QI+K     K PD
Sbjct: 324 DAATWSSAVVLSRRENEGLEVMSDARYAPIYCEQIVKGLSYTKCPD 369


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,225,754
Number of Sequences: 27780
Number of extensions: 389029
Number of successful extensions: 1092
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1054
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1092
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)