Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120005.Seq
(647 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81465-4|CAB03866.3| 613|Caenorhabditis elegans Hypothetical pr... 29 2.1
AL032646-13|CAA21687.3| 613|Caenorhabditis elegans Hypothetical... 29 2.1
Z82260-3|CAB05131.1| 346|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z79639-1|CAB01916.1| 2948|Caenorhabditis elegans Hypothetical pr... 29 3.8
U97593-7|AAB52878.1| 591|Caenorhabditis elegans Prion-like-(q/n... 28 6.6
U97593-6|AAB52879.2| 925|Caenorhabditis elegans Prion-like-(q/n... 28 6.6
U97593-5|AAB52880.1| 1175|Caenorhabditis elegans Prion-like-(q/n... 28 6.6
U12966-3|AAA20614.1| 128|Caenorhabditis elegans Temporarily ass... 28 6.6
AF067608-5|AAK95865.1| 523|Caenorhabditis elegans Hypothetical ... 27 8.7
>Z81465-4|CAB03866.3| 613|Caenorhabditis elegans Hypothetical
protein Y54E2A.1 protein.
Length = 613
Score = 29.5 bits (63), Expect = 2.1
Identities = 25/82 (30%), Positives = 33/82 (40%), Gaps = 6/82 (7%)
Frame = +1
Query: 76 GNNMALMPVGMAPRQMRVNRCIFASIVSFDAC-ITYKSPCSPDAYHDDGW----FICNS- 237
GN+M + V R V AS+ + D C I + P Y W F C S
Sbjct: 89 GNSMVIFVVNRFKRMRNVTNIFLASLSTADLCLIWFCVPIMFMKYMSHTWSMGRFACYSV 148
Query: 238 HLIKRLKCQKWFCPFSTKTTIN 303
H I++ C FC T T I+
Sbjct: 149 HYIQQFTC---FCSVLTMTMIS 167
>AL032646-13|CAA21687.3| 613|Caenorhabditis elegans Hypothetical
protein Y54E2A.1 protein.
Length = 613
Score = 29.5 bits (63), Expect = 2.1
Identities = 25/82 (30%), Positives = 33/82 (40%), Gaps = 6/82 (7%)
Frame = +1
Query: 76 GNNMALMPVGMAPRQMRVNRCIFASIVSFDAC-ITYKSPCSPDAYHDDGW----FICNS- 237
GN+M + V R V AS+ + D C I + P Y W F C S
Sbjct: 89 GNSMVIFVVNRFKRMRNVTNIFLASLSTADLCLIWFCVPIMFMKYMSHTWSMGRFACYSV 148
Query: 238 HLIKRLKCQKWFCPFSTKTTIN 303
H I++ C FC T T I+
Sbjct: 149 HYIQQFTC---FCSVLTMTMIS 167
>Z82260-3|CAB05131.1| 346|Caenorhabditis elegans Hypothetical
protein C32H11.4 protein.
Length = 346
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +1
Query: 100 VGMAPRQMRVNRCIFASIVSFDACITYKSPCSPDAYH 210
+GM P + + + +FA+ S D + SP P+ Y+
Sbjct: 146 IGMQPHVLNITQDLFAADFSSDKVALFVSPADPNDYY 182
>Z79639-1|CAB01916.1| 2948|Caenorhabditis elegans Hypothetical
protein F54E4.1 protein.
Length = 2948
Score = 28.7 bits (61), Expect = 3.8
Identities = 25/113 (22%), Positives = 48/113 (42%), Gaps = 1/113 (0%)
Frame = +3
Query: 282 FDEDDNQFKMTIARHLVGNKERGIKRILIPSATNYQEVFNLNSMMQAEQLIFHLIYNNEE 461
FDE N+FK+ HL +++ + N + V+ L ++ E L F +
Sbjct: 18 FDEIKNRFKICKNDHLKHQTSMNAHQVITGALNNGENVYALGNI---EGLTFTACAVGSD 74
Query: 462 AVNVICDNLKYTEVFTAARN-ALYTAFTQLQEAF*TPQTRTRFVRVCRATNCG 617
V ++ + ++ ++N L ++ + QE T V++ ATN G
Sbjct: 75 VV-ILDSDFNRVQIIPESKNHLLVSSLSCCQETGKIAVTYGNLVKILEATNSG 126
>U97593-7|AAB52878.1| 591|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 22,
isoform b protein.
Length = 591
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = +2
Query: 401 SKQYDASRTTNLSFDI*QXXXXXXYMRQSKIYRSFHSGTQRVIHSVYATTR 553
++QY ++ T+N Q Y +Q Y+S HS QR+++S Y T +
Sbjct: 28 TRQYSSNATSNYPSQTQQ------YQQQQHQYQSDHSNAQRLLNSGYNTNQ 72
>U97593-6|AAB52879.2| 925|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 22,
isoform c protein.
Length = 925
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = +2
Query: 401 SKQYDASRTTNLSFDI*QXXXXXXYMRQSKIYRSFHSGTQRVIHSVYATTR 553
++QY ++ T+N Q Y +Q Y+S HS QR+++S Y T +
Sbjct: 447 TRQYSSNATSNYPSQTQQ------YQQQQHQYQSDHSNAQRLLNSGYNTNQ 491
>U97593-5|AAB52880.1| 1175|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 22,
isoform a protein.
Length = 1175
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = +2
Query: 401 SKQYDASRTTNLSFDI*QXXXXXXYMRQSKIYRSFHSGTQRVIHSVYATTR 553
++QY ++ T+N Q Y +Q Y+S HS QR+++S Y T +
Sbjct: 612 TRQYSSNATSNYPSQTQQ------YQQQQHQYQSDHSNAQRLLNSGYNTNQ 656
>U12966-3|AAA20614.1| 128|Caenorhabditis elegans Temporarily
assigned gene nameprotein 174 protein.
Length = 128
Score = 27.9 bits (59), Expect = 6.6
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +1
Query: 541 RNYKKHSRHHKPEHVLFA 594
+++KKH H +PEHV +A
Sbjct: 72 KDHKKHMSHERPEHVEYA 89
>AF067608-5|AAK95865.1| 523|Caenorhabditis elegans Hypothetical
protein B0511.8 protein.
Length = 523
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 490 NIPKFSQRHATRYTQRLRNYKKHSRHHKPEHVL 588
N+P S +T Y R Y+K +HH+P+H+L
Sbjct: 41 NVPAKSANASTVY--RPPYYRKPHQHHEPKHML 71
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,598,910
Number of Sequences: 27780
Number of extensions: 291945
Number of successful extensions: 801
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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