BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= NV060126.seq (686 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value L21758-1|AAA16827.1| 264|Caenorhabditis elegans osteonectin pro... 34 0.083 AF036692-3|AAB88325.1| 264|Caenorhabditis elegans Osteonectin (... 34 0.083 AC024826-3|AAP13746.1| 343|Caenorhabditis elegans Hypothetical ... 30 1.8 AC024826-2|AAF60798.1| 413|Caenorhabditis elegans Hypothetical ... 30 1.8 Z47069-1|CAA87338.1| 964|Caenorhabditis elegans Hypothetical pr... 29 2.4 AF022983-3|AAB69942.2| 399|Caenorhabditis elegans Nuclear hormo... 29 4.1 Z71264-6|CAC35821.1| 374|Caenorhabditis elegans Hypothetical pr... 28 5.4 AL008986-1|CAC35820.1| 374|Caenorhabditis elegans Hypothetical ... 28 5.4 AC006608-11|AAF39761.1| 360|Caenorhabditis elegans Hypothetical... 28 5.4 Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical pr... 28 7.2 U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical p... 28 7.2 AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synapt... 28 7.2 >L21758-1|AAA16827.1| 264|Caenorhabditis elegans osteonectin protein. Length = 264 Score = 34.3 bits (75), Expect = 0.083 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 1/55 (1%) Frame = +3 Query: 348 PCLKVHCSAGRVCEINEHGDAMCTASRTVPTRQTSRR-MVCTNFNETWQSDCEVY 509 PC C G+ C + + G+ C P VC N N+T+ S C++Y Sbjct: 52 PCEDHQCGWGKECVVGKKGEPTCECISKCPELDGDPMDKVCANNNQTFTSLCDLY 106 >AF036692-3|AAB88325.1| 264|Caenorhabditis elegans Osteonectin (sparc) related protein1 protein. Length = 264 Score = 34.3 bits (75), Expect = 0.083 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 1/55 (1%) Frame = +3 Query: 348 PCLKVHCSAGRVCEINEHGDAMCTASRTVPTRQTSRR-MVCTNFNETWQSDCEVY 509 PC C G+ C + + G+ C P VC N N+T+ S C++Y Sbjct: 52 PCEDHQCGWGKECVVGKKGEPTCECISKCPELDGDPMDKVCANNNQTFTSLCDLY 106 >AC024826-3|AAP13746.1| 343|Caenorhabditis elegans Hypothetical protein Y55F3AM.6b protein. Length = 343 Score = 29.9 bits (64), Expect = 1.8 Identities = 16/56 (28%), Positives = 26/56 (46%) Frame = +2 Query: 476 QRNLAIGLRSIRQRCLCLDNSDQCRGPQYHHVSNRVLXERGREMPDCTEKRDV*LP 643 ++NL G+ + Q C CLD Q R +V + + R P+C + D +P Sbjct: 222 EKNLRFGILNGCQHCFCLDCIRQWRSKDQENV--ELATKTVRSCPECRQHSDYVIP 275 >AC024826-2|AAF60798.1| 413|Caenorhabditis elegans Hypothetical protein Y55F3AM.6a protein. Length = 413 Score = 29.9 bits (64), Expect = 1.8 Identities = 16/56 (28%), Positives = 26/56 (46%) Frame = +2 Query: 476 QRNLAIGLRSIRQRCLCLDNSDQCRGPQYHHVSNRVLXERGREMPDCTEKRDV*LP 643 ++NL G+ + Q C CLD Q R +V + + R P+C + D +P Sbjct: 222 EKNLRFGILNGCQHCFCLDCIRQWRSKDQENV--ELATKTVRSCPECRQHSDYVIP 275 >Z47069-1|CAA87338.1| 964|Caenorhabditis elegans Hypothetical protein F36G3.1 protein. Length = 964 Score = 29.5 bits (63), Expect = 2.4 Identities = 13/36 (36%), Positives = 21/36 (58%) Frame = +3 Query: 471 NFNETWQSDCEVYASDAYASTTLISAVVRNTTTFQI 578 N+ SDCE YA+ +S T IS V+ ++ T ++ Sbjct: 21 NYKSPESSDCEGYATPLASSLTDISNVINHSVTIKV 56 >AF022983-3|AAB69942.2| 399|Caenorhabditis elegans Nuclear hormone receptor familyprotein 270 protein. Length = 399 Score = 28.7 bits (61), Expect = 4.1 Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 2/37 (5%) Frame = -3 Query: 198 PAAELLRRWTFSSRGAD--PAVPTPHTLASAVQMTAI 94 P +++ RRW +SRG P+ + H+L ++ M A+ Sbjct: 15 PLSKISRRWNLNSRGGAIVPSSTSVHSLGHSISMLAV 51 >Z71264-6|CAC35821.1| 374|Caenorhabditis elegans Hypothetical protein K07G5.6 protein. Length = 374 Score = 28.3 bits (60), Expect = 5.4 Identities = 10/30 (33%), Positives = 18/30 (60%) Frame = +2 Query: 437 YETDFQTHGVHKLQRNLAIGLRSIRQRCLC 526 YE+D THG+ ++ +NL +G + + C Sbjct: 332 YESDHLTHGISEIVKNLLLGRKDQQLEVAC 361 >AL008986-1|CAC35820.1| 374|Caenorhabditis elegans Hypothetical protein K07G5.6 protein. Length = 374 Score = 28.3 bits (60), Expect = 5.4 Identities = 10/30 (33%), Positives = 18/30 (60%) Frame = +2 Query: 437 YETDFQTHGVHKLQRNLAIGLRSIRQRCLC 526 YE+D THG+ ++ +NL +G + + C Sbjct: 332 YESDHLTHGISEIVKNLLLGRKDQQLEVAC 361 >AC006608-11|AAF39761.1| 360|Caenorhabditis elegans Hypothetical protein C15F1.1 protein. Length = 360 Score = 28.3 bits (60), Expect = 5.4 Identities = 15/46 (32%), Positives = 19/46 (41%) Frame = -3 Query: 207 RDVPAAELLRRWTFSSRGADPAVPTPHTLASAVQMTAITRANARRP 70 RD+P +L+R WT R A TL +Q R N P Sbjct: 315 RDLPVHDLVREWTLLDRSTLQARLNMETLTHGMQEHTFIRYNKIEP 360 >Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical protein W01F3.3 protein. Length = 2175 Score = 27.9 bits (59), Expect = 7.2 Identities = 11/34 (32%), Positives = 15/34 (44%) Frame = +3 Query: 351 CLKVHCSAGRVCEINEHGDAMCTASRTVPTRQTS 452 C K C +G C + +H C + V QTS Sbjct: 499 CAKTDCPSGYRCSVVQHSSVCCPENNKVVGLQTS 532 >U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical protein F41G3.12 protein. Length = 1483 Score = 27.9 bits (59), Expect = 7.2 Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 1/54 (1%) Frame = +3 Query: 348 PCLKVHCSAGRVCEINEHGDAMCTASRTVPTR-QTSRRMVCTNFNETWQSDCEV 506 PC K+ C C + A C P R + R VC ET+ ++CE+ Sbjct: 369 PCEKMECGFWGSCVVKPDRTAECEC----PNRCEDVMRPVCATNGETFDNECEM 418 >AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synaptic protein) homologfamily member protein. Length = 1473 Score = 27.9 bits (59), Expect = 7.2 Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 1/54 (1%) Frame = +3 Query: 348 PCLKVHCSAGRVCEINEHGDAMCTASRTVPTR-QTSRRMVCTNFNETWQSDCEV 506 PC K+ C C + A C P R + R VC ET+ ++CE+ Sbjct: 377 PCEKMECGFWGSCVVKPDRTAECEC----PNRCEDVMRPVCATNGETFDNECEM 426 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,986,537 Number of Sequences: 27780 Number of extensions: 291621 Number of successful extensions: 925 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 876 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 925 length of database: 12,740,198 effective HSP length: 79 effective length of database: 10,545,578 effective search space used: 1571291122 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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