BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= NV060104.seq (680 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AF036694-1|AAB88344.1| 260|Caenorhabditis elegans Proteasome al... 129 2e-30 Z80215-2|CAB02269.1| 253|Caenorhabditis elegans Hypothetical pr... 73 1e-13 AC006708-4|AAF60416.2| 250|Caenorhabditis elegans Proteasome al... 71 6e-13 Z79754-8|CAB02097.1| 248|Caenorhabditis elegans Hypothetical pr... 64 1e-10 Z74030-2|CAA98441.1| 231|Caenorhabditis elegans Hypothetical pr... 56 2e-08 Z48544-9|CAA88436.2| 250|Caenorhabditis elegans Hypothetical pr... 39 0.004 Z81564-1|CAB04567.1| 284|Caenorhabditis elegans Hypothetical pr... 33 0.19 Z78415-1|CAB01671.1| 280|Caenorhabditis elegans Hypothetical pr... 29 2.3 Z72504-6|CAA96604.2| 906|Caenorhabditis elegans Hypothetical pr... 28 7.1 >AF036694-1|AAB88344.1| 260|Caenorhabditis elegans Proteasome alpha subunit protein 6 protein. Length = 260 Score = 129 bits (312), Expect = 2e-30 Identities = 62/141 (43%), Positives = 90/141 (63%) Frame = +1 Query: 91 MFRNQYDSDVTVWSPQGRLHQVGVCNGSCETWFCNHWSEE*GLCGVDSVETRCERLSAYQ 270 MFRNQYD DVTVWSPQGRLHQV + + + + +++ LS++Q Sbjct: 1 MFRNQYDGDVTVWSPQGRLHQVEYAVEAMKQGSATVGIKSETHAVIVALKRAQNDLSSHQ 60 Query: 271 KKIIPIDEHIGISISGLTADARMLSRYMRTECLNHRYSHDAPMPVGRLISSVGNKMQICT 450 KK+ ID H G+SI+GL +D R+L+RY++TEC + R+ + +P+ +L S+ K+Q T Sbjct: 61 KKVYEIDTHAGVSIAGLLSDGRILARYLQTECSSWRWDYKQAVPIKKLAESMQLKLQANT 120 Query: 451 QRYDKRPLGVGLLVAGYDDQG 513 Q Y +RP GVG+L+AGYD G Sbjct: 121 QYYGRRPFGVGILIAGYDKDG 141 >Z80215-2|CAB02269.1| 253|Caenorhabditis elegans Hypothetical protein C36B1.4 protein. Length = 253 Score = 73.3 bits (172), Expect = 1e-13 Identities = 47/160 (29%), Positives = 80/160 (50%), Gaps = 7/160 (4%) Frame = +1 Query: 100 NQYDSDVTVWSPQGRLHQVGVCNGSCETWFCNHWSEE*GLCGVDSVETRCERLS--AYQ- 270 N+YD +T++SP G L QV + + S G+ G D + E+ S A Q Sbjct: 2 NRYDRAITIFSPDGHLFQVEYAQEAVKKG-----STAVGVRGKDCIVIGVEKKSIPALQD 56 Query: 271 ----KKIIPIDEHIGISISGLTADARMLSRYMRTECLNHRYSHDAPMPVGRLISSVGNKM 438 +KI ID+H+ ++ +GL+ADAR+L R EC +++ + + P+ V + + N Sbjct: 57 DRTIRKIHMIDDHVMLAFAGLSADARVLVDRARIECQSYKLTLEDPVTVAYISRYIANTK 116 Query: 439 QICTQRYDKRPLGVGLLVAGYDDQGXSYFTRLVRQANYFD 558 Q TQ +RP G+ +L+ G+D G + Y++ Sbjct: 117 QRFTQSPGRRPFGISMLIGGFDHDGTPRLFKTEPSGAYYE 156 >AC006708-4|AAF60416.2| 250|Caenorhabditis elegans Proteasome alpha subunit protein 3 protein. Length = 250 Score = 71.3 bits (167), Expect = 6e-13 Identities = 43/142 (30%), Positives = 77/142 (54%), Gaps = 8/142 (5%) Frame = +1 Query: 103 QYDSDVTVWSPQGRLHQVGVCNGSCETWFCNHWSEE*GLCGVDSVETRCERLSAYQ---- 270 +YDS T++SP+GRL+QV + +H G+ + + ER + ++ Sbjct: 4 RYDSRTTIFSPEGRLYQVEYAMEAI-----SHAGTCLGILSSEGIVVAAERKNVHKLLDD 58 Query: 271 ----KKIIPIDEHIGISISGLTADARMLSRYMRTECLNHRYSHDAPMPVGRLISSVGNKM 438 +K+ + ++I +++G+TADA +L ++R ++R S+ MPV +L+ ++ N+ Sbjct: 59 SVMTEKVYRLSDNISCTVAGITADANILINHLRWWAASYRNSYGEEMPVEQLVQNLCNEK 118 Query: 439 QICTQRYDKRPLGVGLLVAGYD 504 Q TQ KRP GV LL G+D Sbjct: 119 QRYTQIGGKRPFGVSLLYIGWD 140 >Z79754-8|CAB02097.1| 248|Caenorhabditis elegans Hypothetical protein F25H2.9 protein. Length = 248 Score = 63.7 bits (148), Expect = 1e-10 Identities = 47/163 (28%), Positives = 78/163 (47%), Gaps = 6/163 (3%) Frame = +1 Query: 97 RNQYDSDVTVWSPQGRLHQVGVCNGSCETWFCNHW--SEE*GLCGVDSVETRCERLSAYQ 270 R++YD V +SP+GRL QV + + + + E L + T ++ Sbjct: 5 RSEYDRGVNTFSPEGRLFQVEYAIEAVKLGSTSIGIKTSEGVLLAAEKRSTSKLMVNDAI 64 Query: 271 KKIIPIDEHIGISISGLTADARMLSRYMRTECLNHRYSHDAPMPVGRLISSVGN-KMQI- 444 +KI +D+HIG++ +GL AD+R L + E N ++++ + V + SV N +Q Sbjct: 65 EKISKVDQHIGVTFAGLIADSRTLVERAQIEAQNFWFTYNRKIRVEDVTQSVANLALQFG 124 Query: 445 --CTQRYDKRPLGVGLLVAGYDDQGXSYFTRLVRQANYFDCRA 567 + RP GV +L AG D +G F L + DC+A Sbjct: 125 DDDVKASMSRPFGVAMLFAGVDQEGAKLF-HLDPSGTFIDCKA 166 >Z74030-2|CAA98441.1| 231|Caenorhabditis elegans Hypothetical protein D1054.2 protein. Length = 231 Score = 56.4 bits (130), Expect = 2e-08 Identities = 39/139 (28%), Positives = 63/139 (45%), Gaps = 4/139 (2%) Frame = +1 Query: 100 NQYDSDVTVWSPQGRLHQVGVCNGSCETWFCNHWSEE*GLCGVDSVETRCERLSAY---- 267 + Y +T +SP G+L Q+ + + + GL D V E + + Sbjct: 3 DHYGFSLTTFSPSGKLMQIEYALNAVK-----NGQPSVGLRAKDGVVLATENVGSVLTDD 57 Query: 268 QKKIIPIDEHIGISISGLTADARMLSRYMRTECLNHRYSHDAPMPVGRLISSVGNKMQIC 447 Q K+ I +HIG SG+ D R+L + R + + + MP +L++ + MQ Sbjct: 58 QPKVEQISKHIGCVYSGMGPDFRILVKKARKIAMEYEMMYGEEMPTIQLVTDIAAVMQEY 117 Query: 448 TQRYDKRPLGVGLLVAGYD 504 TQ RP G LL+AG+D Sbjct: 118 TQSGGVRPFGASLLIAGWD 136 >Z48544-9|CAA88436.2| 250|Caenorhabditis elegans Hypothetical protein ZK945.2 protein. Length = 250 Score = 38.7 bits (86), Expect = 0.004 Identities = 32/139 (23%), Positives = 55/139 (39%), Gaps = 4/139 (2%) Frame = +1 Query: 106 YDSDVTVWSPQGRLHQVGVCNGSCETWFCNHWSEE*GLCGVDSVETRCERLSAYQKKIIP 285 YD + +SP GR+ QV + + G GV V + Y P Sbjct: 8 YDLAASTFSPDGRIFQVEYAQKAVDN--AGTMIAIRGKNGVVVVADKLISSKLYTDNANP 65 Query: 286 ----IDEHIGISISGLTADARMLSRYMRTECLNHRYSHDAPMPVGRLISSVGNKMQICTQ 453 +++++G++++G D L Y E + + PMP+ + +SV + I T Sbjct: 66 RMFNVNDNVGVAVAGNYPDGFALKNYAYGEAMKWLKDYREPMPIQNIANSVAEYIHIHTL 125 Query: 454 RYDKRPLGVGLLVAGYDDQ 510 RP G G ++ Q Sbjct: 126 GI-SRPFGAGAFFMSWNKQ 143 >Z81564-1|CAB04567.1| 284|Caenorhabditis elegans Hypothetical protein K05C4.1 protein. Length = 284 Score = 33.1 bits (72), Expect = 0.19 Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 1/104 (0%) Frame = +1 Query: 217 LCGVDSVETRCERLSAYQ-KKIIPIDEHIGISISGLTADARMLSRYMRTECLNHRYSHDA 393 + VDS + E +S+ KI+ I + + +++G AD + +R + C + Sbjct: 84 IVAVDSRASSGEYISSKSVMKILDIGDRMVATMAGGAADCQFWTRIVAKYCTLYELREKT 143 Query: 394 PMPVGRLISSVGNKMQICTQRYDKRPLGVGLLVAGYDDQGXSYF 525 + V N + Y + L VG +VAGYD +G F Sbjct: 144 SITVSAASKYFANTLY----GYRGQGLSVGSMVAGYDKKGPQIF 183 >Z78415-1|CAB01671.1| 280|Caenorhabditis elegans Hypothetical protein C17G1.1 protein. Length = 280 Score = 29.5 bits (63), Expect = 2.3 Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 1/54 (1%) Frame = +2 Query: 407 DVSSRQLVTKCRFV-PRDMTSDPWVWACWLLVMMTRXPHILPDLSVRPTTLIVV 565 DV ++ + C + + T + W W L+ PDLS++PTT++++ Sbjct: 80 DVVIKECASACVSIYTKSKTREGWFWTSVLMDCSEALIWSSPDLSLKPTTMVLL 133 >Z72504-6|CAA96604.2| 906|Caenorhabditis elegans Hypothetical protein C29E6.4 protein. Length = 906 Score = 27.9 bits (59), Expect = 7.1 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 3/53 (5%) Frame = +1 Query: 244 RCERLSAYQ---KKIIPIDEHIGISISGLTADARMLSRYMRTECLNHRYSHDA 393 RCE SAY KK IDE I I TA+ + + ++ +C++ + HDA Sbjct: 94 RCEE-SAYMFDTKKGYRIDE-TPIRIIDATAEVQCMEECVKIQCMSFGFHHDA 144 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,725,124 Number of Sequences: 27780 Number of extensions: 339527 Number of successful extensions: 917 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 888 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 906 length of database: 12,740,198 effective HSP length: 79 effective length of database: 10,545,578 effective search space used: 1550199966 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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