Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060067.seq
         (591 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53181-12|AAA93490.1|  134|Caenorhabditis elegans Hypothetical p...    29   3.3  
Z71260-1|CAA95798.1|  744|Caenorhabditis elegans Hypothetical pr...    27   7.5  
U60113-1|AAB03334.1|  715|Caenorhabditis elegans SEM-4 short for...    27   7.5  
U60112-1|AAB03333.1|  744|Caenorhabditis elegans SEM-4 long form...    27   7.5  
U41532-1|AAF99904.3|  370|Caenorhabditis elegans Hypothetical pr...    27   7.5  
U46674-5|AAA85757.1|  708|Caenorhabditis elegans Hypothetical pr...    27   10.0 

>U53181-12|AAA93490.1|  134|Caenorhabditis elegans Hypothetical
           protein F36D4.6 protein.
          Length = 134

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = +3

Query: 204 TVSSTFD---HPFSTPXLRSTGTETKSNSVTVQSLPNVSS 314
           T SS F    HPFS+P LR     T   +V + S P V+S
Sbjct: 3   TYSSPFSRLLHPFSSPPLRPHQDSTTRQTVFIYSSPPVNS 42


>Z71260-1|CAA95798.1|  744|Caenorhabditis elegans Hypothetical
           protein F15C11.1 protein.
          Length = 744

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +2

Query: 470 RSHYYWRSRPYGISYPPLRSRLHQPDHQI--PDSIH 571
           RS + +R  P  IS PP  + +HQ  HQI  P  IH
Sbjct: 356 RSKHSFRGLP--ISLPPQLAAMHQHQHQIAPPQRIH 389


>U60113-1|AAB03334.1|  715|Caenorhabditis elegans SEM-4 short form
           protein.
          Length = 715

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +2

Query: 470 RSHYYWRSRPYGISYPPLRSRLHQPDHQI--PDSIH 571
           RS + +R  P  IS PP  + +HQ  HQI  P  IH
Sbjct: 327 RSKHSFRGLP--ISLPPQLAAMHQHQHQIAPPQRIH 360


>U60112-1|AAB03333.1|  744|Caenorhabditis elegans SEM-4 long form
           protein.
          Length = 744

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +2

Query: 470 RSHYYWRSRPYGISYPPLRSRLHQPDHQI--PDSIH 571
           RS + +R  P  IS PP  + +HQ  HQI  P  IH
Sbjct: 356 RSKHSFRGLP--ISLPPQLAAMHQHQHQIAPPQRIH 389


>U41532-1|AAF99904.3|  370|Caenorhabditis elegans Hypothetical
           protein F11D5.5 protein.
          Length = 370

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 25/106 (23%), Positives = 49/106 (46%), Gaps = 8/106 (7%)
 Frame = +3

Query: 273 SNSVTVQSLPNVSSIIRGYRDAYLVNLEAVVXTSAPSXKXPVTVDLC-WTTADVTVEGVN 449
           S+S+  + +  ++++++ +R   + +LE  +     S    +T ++  +  A V+  GVN
Sbjct: 176 SDSIGRRPIFVIAALLQYFRTCIIFSLEITIYIFGSSWLTRITYNMVEFLAALVSATGVN 235

Query: 450 VLXX-------PSSARITIGGLALMASATLPCDLGYINPIIKSPIP 566
            L         P SAR  IG   ++AS  +   +    PII +  P
Sbjct: 236 SLRLLLTMELFPPSARTVIGQTQMIASILIGFPILSSFPIINTMFP 281


>U46674-5|AAA85757.1|  708|Caenorhabditis elegans Hypothetical
           protein T26A8.1 protein.
          Length = 708

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +3

Query: 198 PGTVSSTFDHPFSTPXLRSTGTETKSNSVTVQSLPNVSS 314
           P T ++T     ST    +T TET S +V   ++P+ +S
Sbjct: 331 PSTSTTTTSSTTSTTTTTTTTTETPSTTVITTTIPSTTS 369


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.316    0.126    0.355 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,000,970
Number of Sequences: 27780
Number of extensions: 179759
Number of successful extensions: 627
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 627
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)