Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021016
         (785 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100673-4|AAP13734.2|  438|Caenorhabditis elegans Hypothetical ...    30   1.6  
Z83244-6|CAD18877.1|  502|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z83244-5|CAB54315.1|  568|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z83244-4|CAB54314.1|  562|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z77657-4|CAB01148.2|  376|Caenorhabditis elegans Hypothetical pr...    28   6.6  
U53337-5|AAP40522.1|  377|Caenorhabditis elegans Hypothetical pr...    28   6.6  
U53337-4|AAA96186.2|  636|Caenorhabditis elegans Hypothetical pr...    28   6.6  
L23646-8|AAM48530.1|  411|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z99277-3|CAB16486.1|  338|Caenorhabditis elegans Hypothetical pr...    28   8.7  
U41534-1|AAB47593.3| 1437|Caenorhabditis elegans Temporarily ass...    28   8.7  
AF098994-5|AAC67473.3|  579|Caenorhabditis elegans Hypothetical ...    28   8.7  

>AF100673-4|AAP13734.2|  438|Caenorhabditis elegans Hypothetical
           protein Y66H1B.5 protein.
          Length = 438

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 20/67 (29%), Positives = 30/67 (44%)
 Frame = +2

Query: 236 VKKNKLPDIMTSKDSVSWEKNGKNRKTVRYVPIQLEAGHPSTSTPIEPVNQGSRIRNVPI 415
           VK     D    +  VS   +      VR+VP    +G P+ S PIE +  G +I    +
Sbjct: 175 VKATVPSDFAQLQPVVSRSPSNPRHHNVRFVP----SGKPNVSIPIEIIYDGLKIDEKLV 230

Query: 416 KYIPVLE 436
           K +P +E
Sbjct: 231 KVLPEVE 237


>Z83244-6|CAD18877.1|  502|Caenorhabditis elegans Hypothetical
           protein W06F12.2c protein.
          Length = 502

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = -2

Query: 508 ISAINDWAHWCVYPWFPCWSP*SILQYWYVFNWYISD 398
           I  I+ W+ + V+PWFP      +    Y   W+  D
Sbjct: 104 IYGIHTWSKYLVWPWFPVMLSSILATLAYCIMWWCGD 140


>Z83244-5|CAB54315.1|  568|Caenorhabditis elegans Hypothetical
           protein W06F12.2b protein.
          Length = 568

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = -2

Query: 508 ISAINDWAHWCVYPWFPCWSP*SILQYWYVFNWYISD 398
           I  I+ W+ + V+PWFP      +    Y   W+  D
Sbjct: 104 IYGIHTWSKYLVWPWFPVMLSSILATLAYCIMWWCGD 140


>Z83244-4|CAB54314.1|  562|Caenorhabditis elegans Hypothetical
           protein W06F12.2a protein.
          Length = 562

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = -2

Query: 508 ISAINDWAHWCVYPWFPCWSP*SILQYWYVFNWYISD 398
           I  I+ W+ + V+PWFP      +    Y   W+  D
Sbjct: 98  IYGIHTWSKYLVWPWFPVMLSSILATLAYCIMWWCGD 134


>Z77657-4|CAB01148.2|  376|Caenorhabditis elegans Hypothetical
           protein F08H9.6 protein.
          Length = 376

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -1

Query: 188 IVGPVAFETCPKGWIFINPTKKTAYISQHGLHLY 87
           I+G  A   CP GWIF NP+    Y     L+ +
Sbjct: 12  IIGLSAASECPSGWIF-NPSTTECYYFSTKLYTF 44


>U53337-5|AAP40522.1|  377|Caenorhabditis elegans Hypothetical
           protein R02E12.2b protein.
          Length = 377

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +3

Query: 159 TSFKRDRADDEYSSDEELPALKRVKQLK 242
           + F  DR DDE  +DE+   +K+++++K
Sbjct: 320 SEFHNDRTDDEQFNDEKAYLIKQIQEMK 347


>U53337-4|AAA96186.2|  636|Caenorhabditis elegans Hypothetical
           protein R02E12.2a protein.
          Length = 636

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +3

Query: 159 TSFKRDRADDEYSSDEELPALKRVKQLK 242
           + F  DR DDE  +DE+   +K+++++K
Sbjct: 579 SEFHNDRTDDEQFNDEKAYLIKQIQEMK 606


>L23646-8|AAM48530.1|  411|Caenorhabditis elegans Hypothetical
           protein F44E2.7c protein.
          Length = 411

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 17/74 (22%), Positives = 31/74 (41%)
 Frame = +2

Query: 287 WEKNGKNRKTVRYVPIQLEAGHPSTSTPIEPVNQGSRIRNVPIKYIPVLENGSGTPARKP 466
           W+K  +NR+ ++    + + G    S P  P+++ SR RN    Y   +        R+ 
Sbjct: 2   WKKTEQNRQMIQGTAHRPDEGSEILSVPASPMSRESRNRNSDDDYYDYVYEDEKPKRRRI 61

Query: 467 RIHTPVRPVINCAD 508
            +    R V   A+
Sbjct: 62  DVEQSRRSVAAAAE 75


>Z99277-3|CAB16486.1|  338|Caenorhabditis elegans Hypothetical
           protein Y53C12A.4 protein.
          Length = 338

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = +3

Query: 159 TSFKRDRADDEYSSDEELPALKRVKQLK 242
           T+F  DR +DE  +DE+   +K++++L+
Sbjct: 310 TAFHNDRTNDEQFNDEKAYLIKQIQELR 337


>U41534-1|AAB47593.3| 1437|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 213 protein.
          Length = 1437

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = +3

Query: 141  ENPTLRTSFKR-DRADDEYSSDEELPALKRVKQLKR 245
            E P+  TS  R DR DD     EELP   R+ +  R
Sbjct: 1387 EEPSKSTSSSRKDRKDDRKEKKEELPKASRIAEPAR 1422


>AF098994-5|AAC67473.3|  579|Caenorhabditis elegans Hypothetical
           protein T06A4.1a protein.
          Length = 579

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = +2

Query: 233 TVKKNKLPDIMTSKDSVSWEKNGKNRKTVRYVPIQLEAGHPSTSTPIEPVNQGSRIR 403
           T ++   P+  TS ++ + E +  N+KT   V  +       T TPI+ V+ G   R
Sbjct: 494 TTEEPTTPEASTSSETSTTENSEPNQKTSTPVAPEASTVEEETITPIKCVDYGDYCR 550


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,740,052
Number of Sequences: 27780
Number of extensions: 342433
Number of successful extensions: 993
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 947
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 993
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)