Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40102
         (496 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   7.2  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   9.5  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    21   9.5  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   9.5  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   9.5  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -1

Query: 157 PTELRIFSTSAAAGVVLPPS 98
           P E    STS ++G++ P S
Sbjct: 304 PAEAESLSTSGSSGILTPVS 323


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 10/42 (23%), Positives = 22/42 (52%)
 Frame = -1

Query: 229 ISCSTSLPLSSVITFLSFSPSASIPTELRIFSTSAAAGVVLP 104
           ++C++S+  S V++     P+A +  +    S  A   V++P
Sbjct: 156 VNCTSSIASSGVVSAGECGPAADVDEKTDANSWWALILVIVP 197


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 132 VEKILSSVGIEADGEKLKKVITELNGK 212
           V K +  +GI    +K+K ++ EL  K
Sbjct: 28  VGKGMKVIGIAPQVDKMKTLVEELKSK 54


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -1

Query: 250 SFSRPAAISCSTSLPLSSVITFLSFSPSASIPT 152
           SF+   A   + S+P +++IT L    +  +PT
Sbjct: 428 SFTATLASIGAASIPSAALITMLIVLTALGLPT 460


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 10/38 (26%), Positives = 17/38 (44%)
 Frame = -1

Query: 487 YFIETHSPSCYS*NINWNSVQRRVLL*SLVKETEAHVI 374
           YF      +  +  I W SVQ+ V +    + TE  ++
Sbjct: 76  YFSSIRRLNSEAHRIRWESVQKEVTVTGTYQLTETELV 113


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,578
Number of Sequences: 438
Number of extensions: 1472
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13667319
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)