Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40081
         (717 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       41   1e-05
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    25   0.54 
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    25   0.54 
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    25   0.54 

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 40.7 bits (91), Expect = 1e-05
 Identities = 23/62 (37%), Positives = 35/62 (56%)
 Frame = +2

Query: 11  VLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGR 190
           V+++  TREL  QI ++  +FS   S ++  V +GG  +      L   C HI+V TPGR
Sbjct: 276 VVIVSPTRELTIQIWQQIVKFS-LNSILKTVVAYGGTSVMHQRGKLSAGC-HILVATPGR 333

Query: 191 IL 196
           +L
Sbjct: 334 LL 335



 Score = 23.8 bits (49), Expect = 1.7
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +1

Query: 328 KQVMMFSATLSKEIRPVCKXFMQD 399
           +Q +MFSAT   E++ + + F+ +
Sbjct: 383 RQTLMFSATFPDEVQHLARRFLNN 406


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 25.4 bits (53), Expect = 0.54
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 627 LDPCLASLPLSTVQGTSKKRFLVWXQFI 710
           +DP   +     VQG +K R++VW + I
Sbjct: 379 VDPTAPNAEERRVQGVTKPRYMVWRETI 406


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 25.4 bits (53), Expect = 0.54
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 627 LDPCLASLPLSTVQGTSKKRFLVWXQFI 710
           +DP   +     VQG +K R++VW + I
Sbjct: 294 VDPTAPNAEERRVQGVTKPRYMVWRETI 321


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 25.4 bits (53), Expect = 0.54
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 627 LDPCLASLPLSTVQGTSKKRFLVWXQFI 710
           +DP   +     VQG +K R++VW + I
Sbjct: 613 VDPTAPNAEERRVQGVTKPRYMVWRETI 640


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,056
Number of Sequences: 438
Number of extensions: 3661
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)