Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30096
         (806 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   2.5  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    22   5.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   7.7  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 371 FDDAGRSTSRGGDRRIEPNTND 436
           FD+ GRS  +G    I+ N ND
Sbjct: 20  FDEGGRSYGKGRGFIIQNNNND 41


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 392 TSRGGDRRIEPNTNDAATRTVTSGSA 469
           T+RGG  ++ P  N A  +    GSA
Sbjct: 101 TNRGGSPKLTPYPNWAQNKAGACGSA 126


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +3

Query: 390  QLREEVTVESNQILTTQRREPSQVARQRDGTGAEGASQS 506
            Q +++   +  Q    Q+++    AR+R+G GA  A  S
Sbjct: 1212 QQQQQQQQQQQQQQQQQQQQQQHQAREREGVGAGIAETS 1250


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,918
Number of Sequences: 438
Number of extensions: 4072
Number of successful extensions: 14
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25610547
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)