Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30087X
         (311 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    23   0.65 
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    23   0.65 
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    23   0.65 
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    23   0.65 
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          20   8.0  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 0.65
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +3

Query: 177 TREHACRCDNKGVEGAVIGGNASPRTPTP 263
           TREHA      GV+  ++G N    T  P
Sbjct: 133 TREHALLAFTLGVKQLIVGVNKMDMTDPP 161


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 23.4 bits (48), Expect = 0.65
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +3

Query: 177 TREHACRCDNKGVEGAVIGGNASPRTPTP 263
           TREHA      GV+  ++G N    T  P
Sbjct: 60  TREHALLAFTLGVKQLIVGVNKMDSTEPP 88


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 23.4 bits (48), Expect = 0.65
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +3

Query: 177 TREHACRCDNKGVEGAVIGGNASPRTPTP 263
           TREHA      GV+  ++G N    T  P
Sbjct: 76  TREHALLAFTLGVKQLIVGVNKMDSTEPP 104


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 0.65
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +3

Query: 177 TREHACRCDNKGVEGAVIGGNASPRTPTP 263
           TREHA      GV+  ++G N    T  P
Sbjct: 133 TREHALLAFTLGVKQLIVGVNKMDSTEPP 161


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = -1

Query: 56 CLRWSNTKKKRT 21
          CLRW+N +   T
Sbjct: 12 CLRWNNYQSNMT 23


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,193
Number of Sequences: 438
Number of extensions: 1617
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6595479
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)