Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30062X
         (523 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   148   4e-38
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   148   4e-38
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.5  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   4.4  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          21   7.7  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  148 bits (358), Expect = 4e-38
 Identities = 68/82 (82%), Positives = 74/82 (90%)
 Frame = +2

Query: 257 AAVSKTAVAPIERVKLLLQVQHVSKQIAGGQRYKGIVDAFVRIPKEQGLLSFWRGNFANV 436
           AA+SKT VAPIERVKLLLQVQH+SKQI+  QRYKG++D FVRIPKEQG LS+WRGN ANV
Sbjct: 21  AAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWRGNLANV 80

Query: 437 IRYFPTQALNFGFKGKYKQVFL 502
           IRYFPTQALNF FK KYKQVFL
Sbjct: 81  IRYFPTQALNFAFKDKYKQVFL 102



 Score = 39.5 bits (88), Expect = 2e-05
 Identities = 17/19 (89%), Positives = 18/19 (94%)
 Frame = +3

Query: 198 MSNLADPVAFAKDFLAGGI 254
           MS LADPVAFAKDFLAGG+
Sbjct: 1   MSGLADPVAFAKDFLAGGV 19



 Score = 25.8 bits (54), Expect = 0.27
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +2

Query: 338 AGGQR-YKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFGF 475
           AGG+R + G+ +   +I K  G+   +RG   +V      +A  FGF
Sbjct: 150 AGGEREFTGLGNCLTKIFKADGITGLYRGFGVSVQGIIIYRAAYFGF 196



 Score = 25.8 bits (54), Expect = 0.27
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +2

Query: 353 YKGIVDAFVRIPKEQGLLSFWRGNFANVIR 442
           YK  +  +  I K +G  +F++G F+N++R
Sbjct: 253 YKSTLHCWATIYKTEGGNAFFKGAFSNILR 282


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  148 bits (358), Expect = 4e-38
 Identities = 68/82 (82%), Positives = 74/82 (90%)
 Frame = +2

Query: 257 AAVSKTAVAPIERVKLLLQVQHVSKQIAGGQRYKGIVDAFVRIPKEQGLLSFWRGNFANV 436
           AA+SKT VAPIERVKLLLQVQH+SKQI+  QRYKG++D FVRIPKEQG LS+WRGN ANV
Sbjct: 21  AAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWRGNLANV 80

Query: 437 IRYFPTQALNFGFKGKYKQVFL 502
           IRYFPTQALNF FK KYKQVFL
Sbjct: 81  IRYFPTQALNFAFKDKYKQVFL 102



 Score = 39.5 bits (88), Expect = 2e-05
 Identities = 17/19 (89%), Positives = 18/19 (94%)
 Frame = +3

Query: 198 MSNLADPVAFAKDFLAGGI 254
           MS LADPVAFAKDFLAGG+
Sbjct: 1   MSGLADPVAFAKDFLAGGV 19



 Score = 25.8 bits (54), Expect = 0.27
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +2

Query: 338 AGGQR-YKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFGF 475
           AGG+R + G+ +   +I K  G+   +RG   +V      +A  FGF
Sbjct: 150 AGGEREFTGLGNCLTKIFKADGITGLYRGFGVSVQGIIIYRAAYFGF 196



 Score = 25.8 bits (54), Expect = 0.27
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +2

Query: 353 YKGIVDAFVRIPKEQGLLSFWRGNFANVIR 442
           YK  +  +  I K +G  +F++G F+N++R
Sbjct: 253 YKSTLHCWATIYKTEGGNAFFKGAFSNILR 282


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 463 ERLGREVPDDVGEVTTPE 410
           ER  RE+PDD+ +   P+
Sbjct: 553 ERANRELPDDLRQKVLPD 570


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 463 ERLGREVPDDVGEVTTPE 410
           ER  RE+PDD+ +   P+
Sbjct: 553 ERANRELPDDLRQKVLPD 570


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -2

Query: 447 KYLMTLAKLPRQNERSPCSLGIRTKASTIPL 355
           K+LM    L      S CSL +  + + +PL
Sbjct: 502 KFLMHKDSLGLSTATSTCSLAVAKQQNQVPL 532


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +3

Query: 123 VIPHPRVPQLPPRHIHLVKIT 185
           +I  P   +LPP H H   +T
Sbjct: 92  IITIPPTRKLPPLHPHTAMVT 112


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,834
Number of Sequences: 438
Number of extensions: 3318
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)