Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30061
         (781 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    25   1.0  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   5.6  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   7.4  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
 Frame = -3

Query: 155 RQPISSLTYSDKW--YSSLQAALSLCIILVFL-SNIF 54
           R P   L Y+  +  YSSL +    CII+VFL  NIF
Sbjct: 331 RTPDQCLFYNTDFIIYSSLSSFYIPCIIMVFLYYNIF 367


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -1

Query: 592 RGSGKR*YMRRNPSSPLQVRQLERLTQLIRVSPPKVQASN 473
           R +G R Y     + P  +  + R   ++RVS PK++  N
Sbjct: 424 RNAGLR-YRGPKQNKPKVLHAIRRGASILRVSMPKIKDVN 462


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = -2

Query: 708 PANLRSRISSKALGYQIVILSMSTVCNVKPAALSKPP 598
           P N+ + ++S ++    VI + + V   +P ++S PP
Sbjct: 730 PTNVATTVTSMSIDQSTVIQTGANVNLWQPLSVSIPP 766


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 231,514
Number of Sequences: 438
Number of extensions: 4934
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24518154
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)