Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10504
         (569 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex det...    22   3.7  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    22   3.7  
AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex det...    22   3.7  
AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    22   3.7  
AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex det...    22   3.7  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    22   3.7  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   3.7  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   6.5  

>AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 28  HYQRQRSSLQGRDRAY 75
           HY R+RS  + R+R Y
Sbjct: 230 HYSRERSCSRDRNREY 245


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 28  HYQRQRSSLQGRDRAY 75
           HY R+RS  + R+R Y
Sbjct: 230 HYSRERSCSRDRNREY 245


>AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 28  HYQRQRSSLQGRDRAY 75
           HY R+RS  + R+R Y
Sbjct: 230 HYSRERSCSRDRNREY 245


>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 28  HYQRQRSSLQGRDRAY 75
           HY R+RS  + R+R Y
Sbjct: 230 HYSRERSCSRDRNREY 245


>AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 28  HYQRQRSSLQGRDRAY 75
           HY R+RS  + R+R Y
Sbjct: 219 HYSRERSCSRDRNREY 234


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 28  HYQRQRSSLQGRDRAY 75
           HY R+RS  + R+R Y
Sbjct: 230 HYSRERSCSRDRNREY 245


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 8/31 (25%), Positives = 17/31 (54%)
 Frame = +1

Query: 235 RQVQRHHKWLDSNQLADKEEYEHKQKELEGI 327
           R   R  +WL  ++   + E+E   ++L+G+
Sbjct: 722 RYYPRRKEWLYLHRARSESEFEMYHQQLQGV 752


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +2

Query: 170 KSTMEDEKLKEKISDSDKQTILDKCN 247
           + +++ EK+K  +S    +T+  KCN
Sbjct: 331 RCSVKREKIKISVSYPSTETLNTKCN 356


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,714
Number of Sequences: 438
Number of extensions: 3093
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16381902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)