Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10446
         (779 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    28   0.11 
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   3.2  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   5.6  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   5.6  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   5.6  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    21   9.7  

>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 27.9 bits (59), Expect = 0.11
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 9   GPEGTGPNILVDCSKGVQYLNEIKDSVVA 95
           GP   GP+ ++D + GV Y  +I  + +A
Sbjct: 294 GPNSQGPSSVIDTNTGVDYFTQINRNGIA 322


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +3

Query: 57  VQYLNEIKDSVVAGFQWAAKEGVMAEENLRGVRFNIYDV 173
           ++  N  K +++ GF   A + +  E N +GV    Y+V
Sbjct: 524 IELANTFK-AIIYGFNVNATKQIKDEANKKGVSLRFYNV 561


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 535 SKPYNVVQETRKRKGLKEGLP 597
           S+PY   +     KG KEG+P
Sbjct: 593 SQPYGFPERLLLPKGKKEGMP 613


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 535 SKPYNVVQETRKRKGLKEGLP 597
           S+PY   +     KG KEG+P
Sbjct: 593 SQPYGFPERLLLPKGKKEGMP 613


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 494 DHWQVSLENRANLRASPTTLYRKRERG 574
           D W+ ++E R  LRAS     R +  G
Sbjct: 866 DKWRGAIEKRKTLRASIAAQRRIQSNG 892


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 314 AVGGIYGVLNRRR 352
           A GGIY + N+RR
Sbjct: 317 AEGGIYDISNKRR 329


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 230,652
Number of Sequences: 438
Number of extensions: 5314
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24518154
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)