Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30137
         (705 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          27   0.17 
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      27   0.17 
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          27   0.17 
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    23   3.7  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    21   8.6  

>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 27.1 bits (57), Expect = 0.17
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 7   VSTQNYSHMKILSTY*NRYILTNKPFLYHLVLH 105
           VS Q+++  K       +Y L +KPF YH+V++
Sbjct: 473 VSIQSHAKAKNTMIKARQYRLNHKPFTYHIVVN 505


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 27.1 bits (57), Expect = 0.17
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 7   VSTQNYSHMKILSTY*NRYILTNKPFLYHLVLH 105
           VS Q+++  K       +Y L +KPF YH+V++
Sbjct: 473 VSIQSHAKAKNTMIKARQYRLNHKPFTYHIVVN 505


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 27.1 bits (57), Expect = 0.17
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 7   VSTQNYSHMKILSTY*NRYILTNKPFLYHLVLH 105
           VS Q+++  K       +Y L +KPF YH+V++
Sbjct: 99  VSIQSHAKAKNTMIKARQYRLNHKPFTYHIVVN 131


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = -3

Query: 472 SLSAYKFRTTYGGSVCGVTTALGRKS 395
           +L + K+R  +  ++C  T  +GR+S
Sbjct: 329 NLMSIKYRNAFKQTICCKTRIIGRRS 354


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +1

Query: 256 HSKMQIQKQQEKDMRER 306
           HSK + Q+++ + MRER
Sbjct: 59  HSKNEQQRKEMEQMRER 75


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,826
Number of Sequences: 438
Number of extensions: 4084
Number of successful extensions: 23
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)