Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30120
         (698 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    22   6.4  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   6.4  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   6.4  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   8.5  

>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +2

Query: 227 GSGMPGGNRGESN 265
           G G PGGN G  N
Sbjct: 143 GDGSPGGNGGPRN 155


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -3

Query: 531 TTVTLVRPDDPGAHS 487
           TTV LV   DPG H+
Sbjct: 121 TTVELVDATDPGEHN 135


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +2

Query: 227 GSGMPGGNRGESN 265
           G G PGGN G  N
Sbjct: 143 GDGSPGGNGGPRN 155


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -1

Query: 539 LHLQLLHWFDPTIPERILCPGSAQTSWELT 450
           ++++ + + +  +PE ILCP    T  E T
Sbjct: 425 VYVREIAFSESCLPEEILCPHFNVTDGETT 454


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,168
Number of Sequences: 438
Number of extensions: 4720
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)