Silkworm BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30026
         (796 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   4.3  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   4.3  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   10.0 
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   10.0 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   10.0 

>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -1

Query: 424 PAEDIAHYTPEECTGDTTAHKSHVDQ 347
           P  D +    E+C+G  +AHK  +D+
Sbjct: 111 PYPDWSFAKYEDCSGIVSAHKIAIDE 136


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -3

Query: 128 SDFRGDFLNHYFGLAKKKKYF 66
           +++ G +LNH + L  K  YF
Sbjct: 203 ANYSGWYLNHDYNLENKLNYF 223


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -3

Query: 128 SDFRGDFLNHYFGLAKKKKYF 66
           +++ G +LNH + L  K  YF
Sbjct: 203 ANYSGWYLNHDYNLENKLIYF 223


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -2

Query: 114 RFSEPLFWVSEKKKIFFYY 58
           + S+P  W+    +IFF Y
Sbjct: 273 KLSDPEVWIDAVTQIFFSY 291


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -2

Query: 114 RFSEPLFWVSEKKKIFFYY 58
           + S+P  W+    +IFF Y
Sbjct: 326 KLSDPEVWIDAVTQIFFSY 344


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 241,283
Number of Sequences: 438
Number of extensions: 5169
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25125039
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)