Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0222.Seq
         (819 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    24   1.9  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    23   4.5  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   4.5  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     23   4.5  

>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 304 YNLTKLTADDIHCCPKVLWVP 366
           Y +T +T   +H   KVLW P
Sbjct: 117 YGVTTMTKAILHYTGKVLWTP 137


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +3

Query: 36  NQKNFRHVTDEYNKQNAKKQSTGSQSDREAANFPNQTRNK 155
           N++N     D  NKQN  +Q+   Q+D +  N   Q  NK
Sbjct: 478 NKQNGNRQND--NKQNGNRQNGNKQNDNK-QNGNRQNDNK 514



 Score = 22.2 bits (45), Expect = 5.9
 Identities = 13/40 (32%), Positives = 17/40 (42%)
 Frame = +3

Query: 36  NQKNFRHVTDEYNKQNAKKQSTGSQSDREAANFPNQTRNK 155
           N  N        NKQN  +Q+   Q+D +  N   Q  NK
Sbjct: 441 NANNQNADNQNANKQNGNRQNDNRQNDNK-QNGNRQNDNK 479


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -2

Query: 290 ISCPLLHSQTFHVISRVLKVFQLLKHSI 207
           +SC   HSQ  ++   VLK  ++++  I
Sbjct: 423 VSCATEHSQLTNISEEVLKEAKIIQEEI 450


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -2

Query: 290 ISCPLLHSQTFHVISRVLKVFQLLKHSI 207
           +SC   HSQ  ++   VLK  ++++  I
Sbjct: 129 VSCATEHSQLTNISEEVLKEAKIIQEEI 156


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,204
Number of Sequences: 438
Number of extensions: 3930
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26096055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)