Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0119
         (648 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    29   0.051
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   2.5  
AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.            21   7.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   7.8  

>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 28.7 bits (61), Expect = 0.051
 Identities = 19/78 (24%), Positives = 37/78 (47%)
 Frame = -1

Query: 411 SLSMGTILSTPIFLKPACNILKFCIYSCSKFVLNLILFIGTLPGNSMSMNWQWXHLYTTL 232
           SL +G ++ T  F     +I    I S +   + ++L    LP N +S+ +    +   +
Sbjct: 418 SLGIGEVI-TVSFTATLASIGAASIPSAALITMLIVLTALGLPTNDISLLFAVDWMLDRI 476

Query: 231 RSSQSLTGDNHSPTLAYH 178
           R+S ++ GD +   + YH
Sbjct: 477 RTSINVLGDGYGAGIVYH 494


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -3

Query: 541 RAPVPHGSPSRRPCVICPHLHS 476
           R P PH   +++P V+ P L++
Sbjct: 182 RTPDPHDETAKKPRVLSPPLNN 203


>AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.
          Length = 50

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +3

Query: 162 ENLSRHDMLAWVNDC 206
           +NL+++ M+ W  DC
Sbjct: 13  KNLNQNQMMIWALDC 27


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 246 LYTTLRSSQSLTGDNH 199
           LY+  RSS+SLT   H
Sbjct: 53  LYSGTRSSESLTAQAH 68


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,050
Number of Sequences: 438
Number of extensions: 4008
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)