SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2019/10/06
 
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0006
         (698 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    24   1.6  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   2.1  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          23   2.8  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   2.8  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   4.9  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +3

Query: 600 CGVESHRRQGYLPVGASCCRS 662
           CGV S       P+ ASCC S
Sbjct: 146 CGVHSLSDYNDKPIPASCCNS 166


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 265 GRGELYNGYSGREHRTSHPL 324
           GRG ++ G+  RE  + +PL
Sbjct: 53  GRGTIFEGHDDREQPSVYPL 72


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 526 NLKRAINRFFESYKHGVI 579
           N K A+N F +  KHG++
Sbjct: 72  NDKEAVNEFMQLLKHGML 89


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 526 NLKRAINRFFESYKHGVI 579
           N K A+N F +  KHG++
Sbjct: 72  NDKEAVNEFMQLLKHGML 89


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +2

Query: 308 EPHIHWKPQLIDGI 349
           + H+ WKP   DGI
Sbjct: 101 DSHLSWKPSDFDGI 114


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,710
Number of Sequences: 438
Number of extensions: 3198
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

The construction of this database has been supported by
Grant-in-Aid for Publication of Scientific Research Results,
JSPS, Japan (1999-2003, 2005-2018).

The EST sequencing was supported by the Genome Analysis Program,National Bioresource Project (NBRP),
Grants-in-Aid for Scientific Research, MEXT,and the Agrigenome Program, NIAS/MAFF.
The maintenance and distribution of the DNA clones are supported by the National Bioresource Project (NBRP).