Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0253.Seq
         (889 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              25   1.2  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    25   1.2  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   6.5  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   6.5  

>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 18/58 (31%), Positives = 23/58 (39%)
 Frame = -2

Query: 414 SLLQGFLECHIAAHCFRRQSFNLVSFPAELGQFIDAFILYDGRVYIEANAVRCLNNSW 241
           SLL   L C  + HC  R SF      A     ++A     G   ++  AVR  N  W
Sbjct: 8   SLLITCLICSPSVHCGTRPSFVSDEMIATAASVVNACQTQTGVATVDIEAVR--NGQW 63


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 3   CSSXFPQSGSFIITLVTFTKDK*Y 74
           CS  F QSG  +I + T T +K Y
Sbjct: 181 CSKTFIQSGQLVIHMRTHTGEKPY 204


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 21/67 (31%), Positives = 31/67 (46%)
 Frame = -3

Query: 380 PPIASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAV*TTPGQSVGATSR*STPV 201
           P IASA S  TSS  P   A+++   S      T+KQ    + +T        +R  + +
Sbjct: 515 PRIASAPSSSTSSSPPAKGAAAAGQPSKRNGGETNKQELKRLKSTVSLLPLPLARTPSVM 574

Query: 200 RASSTSR 180
            ASST +
Sbjct: 575 SASSTCK 581


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +2

Query: 521 RSHRISSFGRIQESNRTGR 577
           RSHR  S  R Q SN+  R
Sbjct: 70  RSHRFKSLPRCQLSNKRDR 88


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 229,776
Number of Sequences: 438
Number of extensions: 4497
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28662543
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)