Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0101
         (609 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    26   0.33 
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   4.1  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   9.4  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   9.4  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          21   9.4  

>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 25.8 bits (54), Expect = 0.33
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = -3

Query: 265 AVLADLEGPGAGSLAPLEPLAEFSAALGAGIGSSVSVTSRQEF 137
           AV++   G  +  + P+EPLA  S  +G   G   SVT RQE+
Sbjct: 51  AVVSLAGGLKSFKILPIEPLAVDSVKIGESQG---SVTLRQEY 90


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -2

Query: 275 YHCRCPGRSGR 243
           +HC CP R GR
Sbjct: 427 FHCYCPVRFGR 437


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = -3

Query: 376 KLLTYFDNF 350
           KL+TYFD+F
Sbjct: 457 KLITYFDHF 465


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = -3

Query: 376 KLLTYFDNF 350
           KL+TYFD+F
Sbjct: 457 KLITYFDHF 465


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = -3

Query: 376 KLLTYFDNF 350
           KL+TYFD+F
Sbjct: 83  KLITYFDHF 91


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,644
Number of Sequences: 438
Number of extensions: 3345
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)