Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0114.Seq
         (575 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    26   0.23 
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    26   0.23 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   2.9  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    21   6.6  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   6.6  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    21   8.7  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 26.2 bits (55), Expect = 0.23
 Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = -2

Query: 523 KVAGISLELRRHDKGVLLRSERANLCLYRVELNQVQFTPFGDSPXR--VLHFR 371
           K+ G+   +  +D+GV  ++   N+       ++V+F   GD   R  +L+FR
Sbjct: 354 KLKGLCPSMANYDRGVFYKNYLLNVSFIDAAGSEVKFDEHGDGLARYEILNFR 406



 Score = 22.2 bits (45), Expect = 3.8
 Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
 Frame = +3

Query: 450 KFARSLRRRTP-LSWRRNSKDIP 515
           K+  SL  RT  L W R +KDIP
Sbjct: 423 KWFNSLDIRTEELIWARGTKDIP 445


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 26.2 bits (55), Expect = 0.23
 Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = -2

Query: 523 KVAGISLELRRHDKGVLLRSERANLCLYRVELNQVQFTPFGDSPXR--VLHFR 371
           K+ G+   +  +D+GV  ++   N+       ++V+F   GD   R  +L+FR
Sbjct: 444 KLKGLCPSMANYDRGVFYKNYLLNVSFIDAAGSEVKFDEHGDGLARYEILNFR 496



 Score = 22.2 bits (45), Expect = 3.8
 Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
 Frame = +3

Query: 450 KFARSLRRRTP-LSWRRNSKDIP 515
           K+  SL  RT  L W R +KDIP
Sbjct: 513 KWFNSLDIRTEELIWARGTKDIP 535


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 347 QERRSKLVSEVENSXGRVSEW 409
           QER S+LV  +EN    V  W
Sbjct: 465 QERESELVPYLENKGNGVYAW 485


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 303 SPVLSSA*QCMPSIDSSH 250
           +PVL S  Q  PSIDS++
Sbjct: 531 TPVLPSRFQSHPSIDSAN 548


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +3

Query: 480 PLSWRRNSKDI 512
           PL WRRN  D+
Sbjct: 341 PLVWRRNGADL 351


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = -2

Query: 172 AVTVYNDRDAPPIQKASDPLAETLGDSVRW 83
           AV  Y D+D  PI   +D   +      RW
Sbjct: 427 AVQKYQDQDYQPIYFVADSFEDAKEKFRRW 456


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,747
Number of Sequences: 438
Number of extensions: 3650
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16626408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)