SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302A08f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    24   1.1  
DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex det...    23   1.9  
DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex det...    23   1.9  
DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex det...    23   1.9  
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    23   1.9  
DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex det...    23   1.9  
DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex det...    23   1.9  
DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex det...    23   1.9  
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    22   4.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   4.4  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   5.8  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   5.8  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 261 NKIYFTP*VYAHTHD*SHSGIHS 193
           N +Y TP  + HT    HS IH+
Sbjct: 406 NNVYSTPGPHHHTMGHGHSHIHA 428


>DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -3

Query: 363 SNYSASFVNYRANRRPVRFFNVI 295
           SNY+    NY  N + ++++N+I
Sbjct: 92  SNYNNYNNNYNTNYKKLQYYNII 114


>DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -3

Query: 363 SNYSASFVNYRANRRPVRFFNVI 295
           SNY+    NY  N + ++++N+I
Sbjct: 92  SNYNNYNNNYNTNYKKLQYYNII 114


>DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -3

Query: 363 SNYSASFVNYRANRRPVRFFNVI 295
           SNY+    NY  N + ++++N+I
Sbjct: 92  SNYNNYNNNYNTNYKKLQYYNII 114


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -3

Query: 363 SNYSASFVNYRANRRPVRFFNVI 295
           SNY+    NY  N + ++++N+I
Sbjct: 92  SNYNNYNNNYNTNYKKLQYYNII 114


>DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -3

Query: 363 SNYSASFVNYRANRRPVRFFNVI 295
           SNY+    NY  N + ++++N+I
Sbjct: 92  SNYNNYNNNYNTNYKKLQYYNII 114


>DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -3

Query: 363 SNYSASFVNYRANRRPVRFFNVI 295
           SNY+    NY  N + ++++N+I
Sbjct: 92  SNYNNYNNNYNTNYKKLQYYNII 114


>DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -3

Query: 363 SNYSASFVNYRANRRPVRFFNVI 295
           SNY+    NY  N + ++++N+I
Sbjct: 92  SNYNNYNNNYNTNYKKLQYYNII 114


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = -3

Query: 363 SNYSASFVNYRANRRPVRFFNVI 295
           +NY+    NY  N + ++++N+I
Sbjct: 96  NNYNNYNNNYNTNYKKLQYYNII 118


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = -2

Query: 232 CPYARLIAQRHSFPENLHR 176
           CPYAR I +R      L R
Sbjct: 4   CPYARCIQERRHIRRELLR 22


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 238 LGCKVYFIREGYQGMV 285
           +G K+YFI+EG   +V
Sbjct: 489 IGSKMYFIQEGIVDIV 504


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 238 LGCKVYFIREGYQGMV 285
           +G K+YFI+EG   +V
Sbjct: 457 IGSKMYFIQEGIVDIV 472


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,164
Number of Sequences: 438
Number of extensions: 3197
Number of successful extensions: 13
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -