Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301H03f
         (462 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   2.8  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    22   2.8  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   2.8  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   2.8  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    22   3.7  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    22   3.7  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   3.7  
DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex det...    21   6.5  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   6.5  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    21   6.5  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             21   6.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   6.5  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   8.5  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   8.5  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +1

Query: 340 CCFAILCWCCSN 375
           CC    CWCC N
Sbjct: 11  CC----CWCCDN 18


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -3

Query: 325 WSSKRCRTYWSSKRC 281
           W S  C  YW++K C
Sbjct: 98  WGS--CNNYWNTKNC 110


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +1

Query: 340 CCFAILCWCCSNPA 381
           CC+  +CW  + PA
Sbjct: 488 CCWWKICWTITTPA 501


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +1

Query: 340 CCFAILCWCCSNPA 381
           CC+  +CW  + PA
Sbjct: 541 CCWWKICWTITTPA 554


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = -3

Query: 88  YCW-NSCDCTRFSSNYKGSSDEYDR 17
           + W N  DC+   S YK + D++DR
Sbjct: 114 WSWANYKDCSGIVSAYKIAIDKFDR 138


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = -3

Query: 88  YCW-NSCDCTRFSSNYKGSSDEYDR 17
           + W N  DC+   S YK + D++DR
Sbjct: 114 WSWANYKDCSGIVSAYKIAIDKFDR 138


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 10/46 (21%), Positives = 22/46 (47%)
 Frame = -2

Query: 449 EVLDHMGSRQRMQQEQGECREPLAGLEQHQHSMAKQHRMPLLEQQE 312
           E    M ++Q+ QQ+Q + +  +   +  Q    +Q +    +QQ+
Sbjct: 413 EQQQQMQAQQQHQQQQQQTQHVINAQQPQQQQQQQQQQQQQQQQQQ 458


>DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 116 HVGYAQAIPQNIPPYA 163
           H+G +   PQ IPP A
Sbjct: 152 HIGPSTPFPQFIPPNA 167


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = -3

Query: 292 SKRCSVGCSYRSSKWSCNRGYGRSE 218
           S  CS   S RSS  S +R   RSE
Sbjct: 18  SNTCSNSQSQRSSGSSISRNSNRSE 42


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -3

Query: 70  DCTRFSSNYKGSSDEYDR 17
           DC++  S +K + D++DR
Sbjct: 118 DCSKIVSAFKIAIDKFDR 135


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = -3

Query: 292 SKRCSVGCSYRSSKWSCNRGYGRSE 218
           S  CS   S RSS  S +R   RSE
Sbjct: 18  SNTCSNSQSQRSSGSSISRNSNRSE 42


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 9/38 (23%), Positives = 19/38 (50%)
 Frame = -2

Query: 419  RMQQEQGECREPLAGLEQHQHSMAKQHRMPLLEQQEVP 306
            + QQ+Q + ++P    +Q Q    +  +    +QQ+ P
Sbjct: 1506 QQQQQQQQQQQPQQQSQQPQQQQPQPQQQQQQQQQQQP 1543


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 70  DCTRFSSNYKGSSDEYDR 17
           DC+   S +K + DEY+R
Sbjct: 122 DCSGIVSAHKIAIDEYER 139


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -3

Query: 382 WQDWSSTSIVWRSSIGCRYWSSKRCRTYWS 293
           ++ ++S S VW   I C    S   R YW+
Sbjct: 812 FRKFTSASDVWSMGIVCWEVMSYGERPYWN 841


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,248
Number of Sequences: 438
Number of extensions: 2133
Number of successful extensions: 14
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12312900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)