Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0142.Seq
(618 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY569707-1|AAS86660.1| 408|Apis mellifera complementary sex det... 25 0.59
AB244761-1|BAE66603.1| 504|Apis mellifera cystathionine beta-sy... 25 0.59
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 24 1.0
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 24 1.0
AY569709-1|AAS86662.1| 408|Apis mellifera complementary sex det... 24 1.4
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein. 23 1.8
DQ011228-1|AAY63897.1| 486|Apis mellifera Amt-2-like protein pr... 22 4.2
AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice... 22 5.5
AY268030-1|AAP23055.1| 602|Apis mellifera dorsal protein protein. 22 5.5
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 21 9.6
>AY569707-1|AAS86660.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 25.0 bits (52), Expect = 0.59
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -3
Query: 226 RDIPAPSTLCTSRTPRDTPSP 164
RD+P ST T+ RDT +P
Sbjct: 137 RDLPGKSTTTTAEVKRDTINP 157
>AB244761-1|BAE66603.1| 504|Apis mellifera cystathionine
beta-synthase protein.
Length = 504
Score = 25.0 bits (52), Expect = 0.59
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +2
Query: 464 SLLRGDTVDCESALNS*IRRKQFISLLN*DNIHKSSRIS 580
SLL+ +TV C+ A++ + +++ DNIH IS
Sbjct: 381 SLLKENTVTCQEAMHMLKNADSQLLVISDDNIHIKGVIS 419
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 24.2 bits (50), Expect = 1.0
Identities = 11/44 (25%), Positives = 16/44 (36%)
Frame = -1
Query: 195 HQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAG 64
H G G + H H+R G + + R P G+G
Sbjct: 1755 HSGTMGPPVGHPTNASAHSRSGSQSMPRQNGRYSRVPSQGGGSG 1798
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 24.2 bits (50), Expect = 1.0
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 4/43 (9%)
Frame = -1
Query: 195 HQGLHGT-HLRHEVEQRVHNRQGHEGVHL---AAARQGHPPHH 79
H +H T H H H++ H AA + GH PHH
Sbjct: 423 HSHIHATPHHHHSHAATPHHQHSTPLAHSSYPAAIQIGHTPHH 465
Score = 21.4 bits (43), Expect = 7.3
Identities = 9/23 (39%), Positives = 11/23 (47%)
Frame = +1
Query: 370 LGSGWCGHHALPSTEHS*VRSPH 438
+G G HA P HS +PH
Sbjct: 419 MGHGHSHIHATPHHHHSHAATPH 441
>AY569709-1|AAS86662.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 23.8 bits (49), Expect = 1.4
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -3
Query: 226 RDIPAPSTLCTSRTPRDTPSP 164
RD+P ST T RDT +P
Sbjct: 137 RDLPGKSTTTTVEVKRDTINP 157
>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
Length = 1598
Score = 23.4 bits (48), Expect = 1.8
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = -1
Query: 171 LRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAGQAHRSQGRR 37
++ E QR H+ Q H + A Q H +++ Q R Q R+
Sbjct: 133 IKQETLQRHHHLQNHHHHLQSTAVQDHHRPYQQQQQQQQRQQQRQ 177
>DQ011228-1|AAY63897.1| 486|Apis mellifera Amt-2-like protein
protein.
Length = 486
Score = 22.2 bits (45), Expect = 4.2
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +3
Query: 192 DVHNVEGAGMSLAGHD 239
DVH V GAG + HD
Sbjct: 110 DVHGVIGAGHWIGDHD 125
>AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice
variant B protein.
Length = 810
Score = 21.8 bits (44), Expect = 5.5
Identities = 11/38 (28%), Positives = 16/38 (42%)
Frame = -2
Query: 215 GSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPR 102
G F VH+ T F T + + + + YI L R
Sbjct: 271 GDFQPVHVHKQTAIAFRTPTYRMQQVEQPVQVYIQLKR 308
>AY268030-1|AAP23055.1| 602|Apis mellifera dorsal protein protein.
Length = 602
Score = 21.8 bits (44), Expect = 5.5
Identities = 11/38 (28%), Positives = 16/38 (42%)
Frame = -2
Query: 215 GSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPR 102
G F VH+ T F T + + + + YI L R
Sbjct: 271 GDFQPVHVHKQTAIAFRTPTYRMQQVEQPVQVYIQLKR 308
>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
protein.
Length = 1370
Score = 21.0 bits (42), Expect = 9.6
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = -3
Query: 373 PDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLG 251
PD L + LD+ +I +F NL +TG R +G
Sbjct: 447 PDALRDLALLKTLDLGENRISNFYNGSFRNLDQLTGLRLIG 487
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,944
Number of Sequences: 438
Number of extensions: 4413
Number of successful extensions: 16
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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