Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0080
         (676 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    36   4e-04
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.66 
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    25   0.87 
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   3.5  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   3.5  
M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee homeobox-...    22   6.1  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    21   8.1  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    21   8.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   8.1  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 35.9 bits (79), Expect = 4e-04
 Identities = 18/48 (37%), Positives = 27/48 (56%)
 Frame = +3

Query: 87  TRIVGGSAANAGAHPHLAGLVIALTNGRTSICGASLLTNTRSVTAAHC 230
           +RIVGG+       P +AG+      G   ICGA++++    +TAAHC
Sbjct: 159 SRIVGGTNTGINEFPMMAGIKRTYEPGM--ICGATIISKRYVLTAAHC 204


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.0 bits (52), Expect = 0.66
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -2

Query: 165  HSSVRSQVQQDGGEHQRWRQNHPQSWYRRSQR 70
            HSS ++Q QQ   + Q+ +Q  PQ   ++ Q+
Sbjct: 1495 HSSQKTQQQQPQQQQQQQQQQQPQQQSQQPQQ 1526


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 24.6 bits (51), Expect = 0.87
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = +2

Query: 137 CWTCDRTDEWQNFH 178
           CW CD+ +E++  H
Sbjct: 467 CWVCDQCEEYEYVH 480


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 397 LHQQHPAHQPSQWKQQ 444
           +H QHP  QP Q + Q
Sbjct: 172 MHTQHPHMQPQQGQHQ 187


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 5/11 (45%), Positives = 9/11 (81%)
 Frame = +2

Query: 137 CWTCDRTDEWQ 169
           CW CD+ +E++
Sbjct: 557 CWVCDQCEEYE 567


>M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E30. ).
          Length = 109

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 605 VLNGSNGRSTAAETRRPLTSAAAE 676
           V    NG++ + E +RP T+ +AE
Sbjct: 7   VKRSHNGKNGSPEEKRPRTAFSAE 30


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +2

Query: 338 SYNMDTLHNDVAIINHNHVGFTNN 409
           S + +T+HN+    N+N+  + NN
Sbjct: 83  SLSNNTIHNNNYKYNYNNNNYNNN 106


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +2

Query: 338 SYNMDTLHNDVAIINHNHVGFTNN 409
           S + +T+HN+    N+N+  + NN
Sbjct: 83  SLSNNTIHNNNYKYNYNNNNYNNN 106


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 13/44 (29%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
 Frame = +3

Query: 201  NTRSVTAAHCWRTRRAQ-AVSSPSLLAQLTSSPEAPGSPPPMSR 329
            N R  T  H       +   S PS    + ++ EAP  PP   R
Sbjct: 941  NLRPATTYHLRIVAENEIGASDPSDTVTIITAEEAPSGPPTSIR 984


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,101
Number of Sequences: 438
Number of extensions: 3371
Number of successful extensions: 14
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)